BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0344400 Os05g0344400|Os05g0344400
         (204 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os05g0344400  Protein of unknown function DUF588 family protein   272   1e-73
Os03g0298300  Protein of unknown function DUF588 family protein   120   5e-28
Os03g0817100  Protein of unknown function DUF588 family protein   119   2e-27
Os07g0692200  Protein of unknown function DUF588 family protein    87   6e-18

>Os05g0344400 Protein of unknown function DUF588 family protein
          Length = 204

 Score =  272 bits (695), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 135/156 (86%), Positives = 135/156 (86%)

Query: 49  RRWRRQDLLEKSGSALRVAAWAFSLLAFVVMGANDHGDWRQFEHYEEYRYVVAIGVLAFI 108
           RRWRRQDLLEKSGSALRVAAWAFSLLAFVVMGANDHGDWRQFEHYEEYRYVVAIGVLAFI
Sbjct: 49  RRWRRQDLLEKSGSALRVAAWAFSLLAFVVMGANDHGDWRQFEHYEEYRYVVAIGVLAFI 108

Query: 109 YTTLQLVRHGVRLTGGQDLQGKVAVLVDFAGDQVTAYLLMSAVSAAIPITNRMREGADNV 168
           YTTLQLVRHGVRLTGGQDLQGKVAVLVDFAGDQVTAYLLMSAVSAAIPITNRMREGADNV
Sbjct: 109 YTTLQLVRHGVRLTGGQDLQGKVAVLVDFAGDQVTAYLLMSAVSAAIPITNRMREGADNV 168

Query: 169 FTDXXXXXXXXXXXXXXXXXXXXXVSGFKLAKQTYI 204
           FTD                     VSGFKLAKQTYI
Sbjct: 169 FTDSSAASISMAFFAFLCLALSALVSGFKLAKQTYI 204



>Os03g0298300 Protein of unknown function DUF588 family protein
          Length = 206

 Score =  120 bits (302), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 76/156 (48%), Positives = 99/156 (63%), Gaps = 1/156 (0%)

Query: 50  RWRRQDLLEKSGSALRVAAWAFSLLAFVVMGANDHGDWRQFEHYEEYRYVVAIGVLAFIY 109
           RWRR+D+L+KS  AL  AA AF+ +A V++ +N HGDW +F+ Y+EYRY++AI  LAF Y
Sbjct: 51  RWRREDMLDKSPLALHAAAAAFAFVALVLVASNQHGDWMEFDRYQEYRYLLAIAALAFAY 110

Query: 110 TTLQLVRHGVRLTGGQD-LQGKVAVLVDFAGDQVTAYLLMSAVSAAIPITNRMREGADNV 168
           +  Q +RH +R+  G D +      L+DFA DQV AYLLMSA+SAA PITNRMR    N 
Sbjct: 111 SLAQALRHALRMRRGVDPVPTASGRLLDFASDQVVAYLLMSALSAATPITNRMRSAVINR 170

Query: 169 FTDXXXXXXXXXXXXXXXXXXXXXVSGFKLAKQTYI 204
           FTD                     VSG+KL+KQTY+
Sbjct: 171 FTDTTAAAISMAFLAFVSLALSAIVSGYKLSKQTYM 206



>Os03g0817100 Protein of unknown function DUF588 family protein
          Length = 156

 Score =  119 bits (298), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 64/141 (45%), Positives = 85/141 (60%), Gaps = 4/141 (2%)

Query: 68  AWAFSLLAFVVMGANDHGD--WRQFEHYEEYRYVVAIGVLAFIYTTLQLVRHGVRLTGGQ 125
           AW FSLLA VVM +N HG    + F++Y EY Y + I ++A +YTT Q+ R   RL+ G+
Sbjct: 16  AWLFSLLALVVMASNKHGHGGAQDFDNYPEYTYCLGISIIAVLYTTAQVTRDVHRLSWGR 75

Query: 126 DLQG--KVAVLVDFAGDQVTAYLLMSAVSAAIPITNRMREGADNVFTDXXXXXXXXXXXX 183
           D+    K A +VDFAGDQV AYLLMSA+SAA P+T+ MR+ ADN+FTD            
Sbjct: 76  DVIAGRKAAAVVDFAGDQVVAYLLMSALSAAAPVTDYMRQAADNLFTDSAAAAISMAFLA 135

Query: 184 XXXXXXXXXVSGFKLAKQTYI 204
                    VSG+ LA +  +
Sbjct: 136 FLAAGLSALVSGYNLAMEVLV 156



>Os07g0692200 Protein of unknown function DUF588 family protein
          Length = 199

 Score = 87.4 bits (215), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 45/115 (39%), Positives = 61/115 (53%), Gaps = 3/115 (2%)

Query: 84  HGDWRQFEHYEEYRYVVAIGVLAFIYTTLQLVRHGVRLTGGQDLQGKVAVLVDFAGDQVT 143
           HGDW +F  Y+EYRY++ + V+A +Y+ LQ  R   R+  G       A  +DFAGDQ  
Sbjct: 78  HGDWMEFTRYQEYRYLLGVAVVASLYSALQAARTFRRMRAG---TAYAATFLDFAGDQAV 134

Query: 144 AYLLMSAVSAAIPITNRMREGADNVFTDXXXXXXXXXXXXXXXXXXXXXVSGFKL 198
            YLL++A SAA+PIT RMR    N FTD                     ++GF+L
Sbjct: 135 GYLLITASSAALPITIRMRSAVVNTFTDVVAASISFAFLAFAALAFSALIAGFRL 189



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.326    0.137    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,238,081
Number of extensions: 146543
Number of successful extensions: 312
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 307
Number of HSP's successfully gapped: 4
Length of query: 204
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 108
Effective length of database: 12,023,257
Effective search space: 1298511756
Effective search space used: 1298511756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 153 (63.5 bits)