BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0657100 Os07g0657100|AK108253
(209 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0657100 Glyoxalase/extradiol ring-cleavage dioxygenase... 412 e-115
Os05g0171900 Glyoxalase/bleomycin resistance protein/dioxyg... 173 9e-44
Os01g0173600 Glyoxalase/bleomycin resistance protein/dioxyg... 164 5e-41
Os04g0538900 Glyoxalase/bleomycin resistance protein/dioxyg... 150 7e-37
>Os07g0657100 Glyoxalase/extradiol ring-cleavage dioxygenase domain containing
protein
Length = 209
Score = 412 bits (1059), Expect = e-115, Method: Compositional matrix adjust.
Identities = 202/209 (96%), Positives = 202/209 (96%)
Query: 1 MGEVCKRVAPSVRXXXXXXXNGDGGGVDPAAESSSAKLYEDVPEMPLMALNHISRLCKSI 60
MGEVCKRVAPSVR NGDGGGVDPAAESSSAKLYEDVPEMPLMALNHISRLCKSI
Sbjct: 1 MGEVCKRVAPSVREEEEEEENGDGGGVDPAAESSSAKLYEDVPEMPLMALNHISRLCKSI 60
Query: 61 DASVRFYVKALGFVLIHRPPALDFNGAWLFNYGVGIHLVQRDDARRAPDVNPGDLDPMDN 120
DASVRFYVKALGFVLIHRPPALDFNGAWLFNYGVGIHLVQRDDARRAPDVNPGDLDPMDN
Sbjct: 61 DASVRFYVKALGFVLIHRPPALDFNGAWLFNYGVGIHLVQRDDARRAPDVNPGDLDPMDN 120
Query: 121 HISFQCEDMGMMEKRLNEMGIEYMKRTINEEEGSPIDQLFFKDPDGFMIEICNCENLELV 180
HISFQCEDMGMMEKRLNEMGIEYMKRTINEEEGSPIDQLFFKDPDGFMIEICNCENLELV
Sbjct: 121 HISFQCEDMGMMEKRLNEMGIEYMKRTINEEEGSPIDQLFFKDPDGFMIEICNCENLELV 180
Query: 181 PAGALGRLRLPRDRHNPPLRMAAAGNDEA 209
PAGALGRLRLPRDRHNPPLRMAAAGNDEA
Sbjct: 181 PAGALGRLRLPRDRHNPPLRMAAAGNDEA 209
>Os05g0171900 Glyoxalase/bleomycin resistance protein/dioxygenase domain
containing protein
Length = 208
Score = 173 bits (438), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 86/161 (53%), Positives = 112/161 (69%), Gaps = 18/161 (11%)
Query: 45 MPLMALNHISRLCKSIDASVRFYVKALGFVLIHRPPALDFNGAWLFNYGVGIHLVQRDDA 104
+PL +LNHIS +C+S+ S+ FY LGF + RP + DF+GAWLFNYG+GIHL+Q +D
Sbjct: 18 LPLASLNHISIVCRSLQESLTFYTDVLGFFPVRRPGSFDFDGAWLFNYGIGIHLLQAED- 76
Query: 105 RRAPDVNPG--DLDPMDNHISFQCEDMGMMEKRLNEMGIEYMKRTINEEEGSPIDQLFFK 162
PD PG +++P DNHISFQCE M +E+RL E+GI Y++R + EE G +DQ+FF
Sbjct: 77 ---PDSLPGKTEINPKDNHISFQCESMVAVERRLKELGIPYIQRCV-EEGGIYVDQIFFH 132
Query: 163 DPDGFMIEICNCENLELVPAGALGRLRLPRDRHNPPLRMAA 203
DPDGFMIEICNC+NL +VP GA + PL MAA
Sbjct: 133 DPDGFMIEICNCDNLPVVPLGA-----------DQPLVMAA 162
>Os01g0173600 Glyoxalase/bleomycin resistance protein/dioxygenase domain
containing protein
Length = 215
Score = 164 bits (415), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 76/154 (49%), Positives = 103/154 (66%), Gaps = 3/154 (1%)
Query: 45 MPLMALNHISRLCKSIDASVRFYVKALGFVLIHRPPALDFNGAWLFNYGVGIHLVQRDDA 104
+PL LNH+S +C+S+ S+ FY LGFV + RP + DF+GAWLFNYG+GIHL+Q +D
Sbjct: 17 LPLSTLNHVSLVCRSLSTSLTFYRDFLGFVSVRRPGSFDFDGAWLFNYGIGIHLLQAEDP 76
Query: 105 RRAPDVNPGDLDPMDNHISFQCEDMGMMEKRLNEMGIEYMKRTINEEEGSPIDQLFFKDP 164
P +++P DNHISF CE M +++RL EMG+ Y++R + EE G +DQ+FF DP
Sbjct: 77 ESMPPNK--EINPKDNHISFTCESMEAVQRRLKEMGVRYVQRRV-EEGGVYVDQIFFHDP 133
Query: 165 DGFMIEICNCENLELVPAGALGRLRLPRDRHNPP 198
DGFMIEIC C+ L +VP A + R PP
Sbjct: 134 DGFMIEICTCDKLPVVPLDAAAAHSIFAGRSPPP 167
>Os04g0538900 Glyoxalase/bleomycin resistance protein/dioxygenase domain
containing protein
Length = 175
Score = 150 bits (378), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 74/146 (50%), Positives = 98/146 (67%), Gaps = 14/146 (9%)
Query: 44 EMPLMALNHISRLCKSIDASVRFYVKALGFVLIHRPPALDFNGAWLFNYGVGIHLVQRDD 103
+PL+ LNH+S C S++ SV FY + LGF LI RP +L+FNGAWL+ YG+GIHL+QR D
Sbjct: 13 SVPLVRLNHVSFQCTSVEKSVDFYRRVLGFELIKRPESLNFNGAWLYKYGMGIHLLQRGD 72
Query: 104 --------ARRAPDVNPGDLDPMDNHISFQCEDMGMMEKRLNEMGIEYMKRTINEEEGSP 155
R P +N PM NH+SFQC DM +M+ RL M E++ R + + E +
Sbjct: 73 DADGCSIPTRPLPAIN-----PMGNHVSFQCSDMAVMKARLRAMDREFVVRKVWDGE-TV 126
Query: 156 IDQLFFKDPDGFMIEICNCENLELVP 181
+DQLFF DPDG MIE+CNCENL ++P
Sbjct: 127 VDQLFFHDPDGNMIEVCNCENLPVIP 152
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.140 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,091,706
Number of extensions: 342083
Number of successful extensions: 649
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 643
Number of HSP's successfully gapped: 4
Length of query: 209
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 113
Effective length of database: 12,023,257
Effective search space: 1358628041
Effective search space used: 1358628041
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 154 (63.9 bits)