Os05g0171900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Glyoxalase/bleomycin resistance protein/dioxygenase domain containing protein.
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Os05g0171900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Glyoxalase/bleomycin resistance protein/dioxygenase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 451.85 | 0.999 | 8.17 | 0.882 | 4.97 | -2.2 | -0.252 | 2.59 | 1.3 | 14.4 | 12.56 | 1444 | -- | -- |
| 466.34 | 1.01 | 8.17 | 0.761 | 4.99 | -2.14 | -0.27 | -- | 1.28 | 14.4 | 13.06 | 1451 | -- | -- |
| 452.08 | 0.99 | 8.17 | 0.877 | 4.97 | -2.19 | -- | 2.61 | 1.29 | 14.4 | 12.55 | 1444 | -- | -- |
| 463.57 | 1 | 8.22 | 0.493 | 4.95 | -2.13 | -- | -- | 1.15 | 14.4 | 12.66 | 1446 | -- | -- |
| 1600.72 | 1.87 | 8.4 | -0.416 | -- | 2.33 | -- | 0.439 | 0.402 | -- | 12.55 | 1444 | -- | -- |
| 613.92 | 1.16 | 8.37 | -0.0754 | 5.06 | -- | 0.0986 | -- | 0.511 | 14.4 | -- | -- | -- | -- |
| 613.96 | 1.16 | 8.37 | -0.0727 | 5.06 | -- | -- | -- | 0.512 | 14.4 | -- | -- | -- | -- |
| 1601.86 | 1.87 | 8.41 | -0.397 | -- | 2.34 | -- | -- | 0.403 | -- | 12.55 | 1444 | -- | -- |
| 467.95 | 1.01 | 8.21 | -- | 4.97 | -1.98 | -- | -- | 1.12 | 14.4 | 16.27 | 1462 | -- | -- |
| 2127.87 | 2.16 | 8.41 | -0.286 | -- | -- | -- | -- | 0.388 | -- | -- | -- | -- | -- |
| 614.1 | 1.16 | 8.37 | -- | 5.06 | -- | -- | -- | 0.52 | 14.4 | -- | -- | -- | -- |
| 1606.02 | 1.87 | 8.4 | -- | -- | 2.33 | -- | -- | 0.447 | -- | 12.55 | 1444 | -- | -- |
| 2130.04 | 2.15 | 8.4 | -- | -- | -- | -- | -- | 0.42 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 443.64 | radiation | 20 | 1440 | < th | dose dependent | rect. | 8 | 9 |
| 2 | 444.11 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 5 |
| 4 | 444.96 | radiation | 10 | 1440 | > th | dose independent | rect. | 6 | 8 |
| 22 | 445.94 | radiation | 20 | 1440 | < th | dose dependent | rect. | 8 | 19 |
| 43 | 447.26 | radiation | 10 | 1440 | > th | dose independent | sin | 4 | NA |
| 50 | 448.31 | radiation | 20 | 1440 | < th | dose dependent | sin | 23 | NA |
| 120 | 451.66 | radiation | 20 | 1440 | < th | dose dependent | rect. | 2 | 15 |
| 146 | 452.15 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 242 | 453.72 | radiation | 20 | 1440 | < th | dose dependent | no | NA | NA |
| 287 | 455.12 | radiation | 20 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 328 | 456.29 | radiation | 10 | 1440 | > th | dose independent | no | NA | NA |
| 411 | 456.94 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 481 | 457.92 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 768 | 461.47 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 889 | 461.91 | radiation | 20 | 1440 | < th | dose independent | rect. | 8 | 11 |
| 904 | 462.08 | radiation | 20 | 1440 | < th | dose independent | rect. | 8 | 19 |
| 935 | 462.27 | radiation | 1 | 1440 | > th | dose dependent | rect. | 8 | 8 |