Os07g0657100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Glyoxalase/extradiol ring-cleavage dioxygenase domain containing protein.
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Os07g0657100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Glyoxalase/extradiol ring-cleavage dioxygenase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 329.68 | 0.853 | 6.4 | -2.29 | 5.68 | 0.976 | 2.58 | -12.6 | -1.12 | 10 | 19 | 793 | 1.54 | -- |
| 446.53 | 0.984 | 6.17 | -0.642 | 5.93 | 1.47 | 1.25 | -- | -0.762 | 10 | 1.922 | 23076 | 0.547 | -- |
| 346.1 | 0.866 | 6.4 | -2.17 | 5.77 | 0.946 | -- | -11.8 | -1.13 | 9.94 | 19.46 | 891 | 1.45 | -- |
| 450.05 | 0.988 | 6.18 | -0.522 | 5.46 | 1.86 | -- | -- | -0.735 | 10.1 | -52.49 | 23889 | 4.24 | -- |
| 624.66 | 1.16 | 6.39 | -1.1 | -- | 7.81 | -- | -6.76 | -1.09 | -- | 0.4754 | 733 | 2.11 | -- |
| 474.4 | 1.02 | 6.04 | 0.713 | 5.86 | -- | 1.25 | -- | -0.2 | 10 | -- | -- | -- | -- |
| 480.52 | 1.03 | 6.04 | 0.762 | 5.85 | -- | -- | -- | -0.197 | 10 | -- | -- | -- | -- |
| 467.33 | 1.01 | 6.25 | 0.508 | -- | 6.4 | -- | -- | -0.405 | -- | -39.47 | 572 | 0.804 | -- |
| 452.96 | 0.991 | 6.15 | -- | 5.58 | 1.48 | -- | -- | -0.586 | 10.2 | -68.16 | 23918 | 5.83 | -- |
| 2544.17 | 2.36 | 6.2 | 0.689 | -- | -- | -- | -- | -0.202 | -- | -- | -- | -- | -- |
| 495.82 | 1.04 | 6.06 | -- | 5.85 | -- | -- | -- | -0.282 | 10 | -- | -- | -- | -- |
| 473.57 | 1.01 | 6.26 | -- | -- | 6.4 | -- | -- | -0.473 | -- | -39.34 | 602 | 1.05 | -- |
| 2556.67 | 2.36 | 6.22 | -- | -- | -- | -- | -- | -0.278 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 322.17 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 4 |
| 3 | 324.84 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 1 |
| 10 | 332.62 | temperature | 20 | 720 | > th | dose dependent | rect. | 24 | 10 |
| 15 | 335.23 | temperature | 20 | 720 | > th | dose dependent | rect. | 22 | 13 |
| 19 | 336.57 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 30 | 341.92 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 3 |
| 76 | 355.39 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 14 |
| 88 | 356.75 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 10 |
| 90 | 357.17 | temperature | 30 | 720 | < th | dose dependent | sin | 8 | NA |
| 179 | 365.77 | temperature | 20 | 720 | < th | dose independent | rect. | 22 | 12 |
| 182 | 365.80 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 9 |
| 189 | 366.18 | temperature | 20 | 720 | > th | dose independent | sin | 7 | NA |
| 205 | 367.17 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 11 |
| 224 | 368.25 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 6 |
| 241 | 369.15 | temperature | 20 | 720 | < th | dose independent | sin | 8 | NA |
| 251 | 369.53 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 4 |
| 309 | 372.01 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 4 |
| 350 | 373.72 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 375 | 374.36 | temperature | 20 | 30 | > th | dose dependent | sin | 4 | NA |
| 500 | 377.21 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 614 | 380.05 | wind | 3 | 43200 | < th | dose dependent | rect. | 20 | 4 |
| 705 | 382.14 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 21 |
| 706 | 382.17 | wind | 3 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 707 | 382.22 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 716 | 382.34 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 15 |
| 731 | 382.61 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 13 | 4 |
| 773 | 383.36 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 804 | 384.01 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 12 | 5 |
| 828 | 384.43 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 12 | 11 |
| 893 | 385.48 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 12 | 11 |
| 944 | 386.16 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 10 |
| 953 | 386.24 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 15 | 2 |
| 991 | 386.64 | wind | 3 | 43200 | < th | dose dependent | rect. | 23 | 1 |