BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0657100 Os07g0657100|AK108253
(209 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G28420.1 | chr2:12157946-12158500 FORWARD LENGTH=185 220 5e-58
AT1G15380.1 | chr1:5290955-5292287 FORWARD LENGTH=175 163 5e-41
AT1G80160.1 | chr1:30151101-30151930 FORWARD LENGTH=168 157 5e-39
AT2G32090.1 | chr2:13644500-13645608 FORWARD LENGTH=136 58 4e-09
>AT2G28420.1 | chr2:12157946-12158500 FORWARD LENGTH=185
Length = 184
Score = 220 bits (560), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 100/161 (62%), Positives = 122/161 (75%), Gaps = 1/161 (0%)
Query: 46 PLMALNHISRLCKSIDASVRFYVKALGFVLIHRPPALDFNGAWLFNYGVGIHLVQRDDAR 105
PLMALNH+SRLCK + S+ FY K LGFV I RP + DF+GAWLFNYGVGIHLVQ D
Sbjct: 17 PLMALNHVSRLCKDVKKSLEFYTKVLGFVEIERPASFDFDGAWLFNYGVGIHLVQAKDQD 76
Query: 106 RAPDVNPGDLDPMDNHISFQCEDMGMMEKRLNEMGIEYMKRTINEEEGSPIDQLFFKDPD 165
+ P + LDPMDNHISFQCEDM +EKRL E+ ++Y+KRT+ +E+ + IDQLFF DPD
Sbjct: 77 KLPS-DTDHLDPMDNHISFQCEDMEALEKRLKEVKVKYIKRTVGDEKDAAIDQLFFNDPD 135
Query: 166 GFMIEICNCENLELVPAGALGRLRLPRDRHNPPLRMAAAGN 206
GFM+EICNCENLELVP + +RLP DRH PP+ + + N
Sbjct: 136 GFMVEICNCENLELVPCHSADAIRLPEDRHAPPVALPDSSN 176
>AT1G15380.1 | chr1:5290955-5292287 FORWARD LENGTH=175
Length = 174
Score = 163 bits (413), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 78/142 (54%), Positives = 104/142 (73%), Gaps = 4/142 (2%)
Query: 47 LMALNHISRLCKSIDASVRFYVKALGFVLIHRPPALDFNGAWLFNYGVGIHLVQRDDARR 106
L +LNH+S LC+S+D S+ FY K LGF+ I RP +L+F GAWLF +G+GIHL+ + +
Sbjct: 11 LTSLNHVSVLCRSVDESMNFYQKVLGFIPIRRPESLNFEGAWLFGHGIGIHLLCAPEPEK 70
Query: 107 APDVNPGDLDPMDNHISFQCEDMGMMEKRLNEMGIEYMKRTINEEEGSPIDQLFFKDPDG 166
P ++P DNHISFQCE MG++EK+L EMGI+Y+ R + EE G +DQLFF DPDG
Sbjct: 71 LPKKTA--INPKDNHISFQCESMGVVEKKLEEMGIDYV-RALVEEGGIQVDQLFFHDPDG 127
Query: 167 FMIEICNCENLELVP-AGALGR 187
FMIEICNC++L +VP G + R
Sbjct: 128 FMIEICNCDSLPVVPLVGEMAR 149
>AT1G80160.1 | chr1:30151101-30151930 FORWARD LENGTH=168
Length = 167
Score = 157 bits (396), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 74/142 (52%), Positives = 102/142 (71%), Gaps = 4/142 (2%)
Query: 47 LMALNHISRLCKSIDASVRFYVKALGFVLIHRPPALDFNGAWLFNYGVGIHLVQRDDARR 106
+ +LNHIS LC+S++ S+ FY LGF+ I RP + DF+GAWLF +G+GIHL+Q + +
Sbjct: 11 IKSLNHISLLCRSVEESISFYQNVLGFLPIRRPDSFDFDGAWLFGHGIGIHLLQSPEPEK 70
Query: 107 APDVNPGDLDPMDNHISFQCEDMGMMEKRLNEMGIEYMKRTINEEEGSPIDQLFFKDPDG 166
+ +++P DNHISFQCE M +EK+L EM IEY+ R + EE G +DQLFF DPD
Sbjct: 71 L--LKKTEINPKDNHISFQCESMEAVEKKLKEMEIEYV-RAVVEEGGIQVDQLFFHDPDA 127
Query: 167 FMIEICNCENLELVP-AGALGR 187
FMIEICNC++L ++P AG + R
Sbjct: 128 FMIEICNCDSLPVIPLAGEMAR 149
>AT2G32090.1 | chr2:13644500-13645608 FORWARD LENGTH=136
Length = 135
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 64/137 (46%), Gaps = 14/137 (10%)
Query: 47 LMALNHISRLCKSIDASVRFYVKALGFVLIHRPPALDFNGAWLFNYG-VGIHLVQRDDAR 105
+ +L HI+R I +FY + GF I P D WL G +H++QR+ +
Sbjct: 1 MASLGHIARESSDITRLAQFYKEVFGFEEIESPDFGDLQVVWLNLPGAFAMHIIQRNPST 60
Query: 106 RAPD---------VNPGDLDPMDNHISFQCEDMGMMEKRLNEMGIEYMKRTINEEEGSPI 156
P+ +P L PM +HI F + L E GIE ++++ + + +
Sbjct: 61 NLPEGPYSATSAVKDPSHL-PMGHHICFSVPNFDSFLHSLKEKGIETFQKSLPDGK---V 116
Query: 157 DQLFFKDPDGFMIEICN 173
Q+FF DPDG +E+ +
Sbjct: 117 KQVFFFDPDGNGLEVAS 133
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.140 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,872,670
Number of extensions: 201366
Number of successful extensions: 399
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 393
Number of HSP's successfully gapped: 5
Length of query: 209
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 115
Effective length of database: 8,529,465
Effective search space: 980888475
Effective search space used: 980888475
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)