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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0538900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glyoxalase/bleomycin resistance protein/dioxygenase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.95 (0.03) R2 : 0.15
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 4.89 (0.565) R2dE : 0.14 R2E : 0.133
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.166 (0.0632) R2dN8 : 0.0167 R2N8 : 0.0103
σ : 0.564
deviance : 146.41
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_____
C
peak time of C : --
E
wheather : radiation
threshold : 8.552
memory length : 28
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 11.1
open length of G : 0.651

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
145.07 0.566 2.95 0.0475 0.15 3.23 0.0411 4.26 0.169 1.97 8.887 29 11.1 0.583
145.05 0.561 2.95 0.037 0.149 4.95 0.0278 -- 0.169 2.01 8.6 28 11.1 0.625
145.06 0.561 2.95 0.0494 0.149 3.26 -- 4.21 0.169 2.05 8.919 28 11.1 0.567
145.06 0.561 2.95 0.0364 0.149 4.94 -- -- 0.169 2.05 8.599 28 11.1 0.629
146.36 0.563 2.95 0.0592 -- 2.86 -- 5.02 0.17 -- 8.82 28 11.1 0.567
169.34 0.61 2.95 0.105 0.107 -- -0.221 -- 0.158 3.01 -- -- -- --
169.5 0.61 2.95 0.109 0.106 -- -- -- 0.159 2.89 -- -- -- --
146.36 0.563 2.95 0.0435 -- 4.88 -- -- 0.171 -- 8.55 28 11.1 0.651
145.09 0.561 2.95 -- 0.15 4.96 -- -- 0.165 2.05 8.599 28 11.1 0.628
170.15 0.61 2.95 0.114 -- -- -- -- 0.162 -- -- -- -- --
169.81 0.61 2.95 -- 0.108 -- -- -- 0.147 2.89 -- -- -- --
146.41 0.564 2.95 -- -- 4.89 -- -- 0.166 -- 8.552 28 11.1 0.651
170.49 0.609 2.95 -- -- -- -- -- 0.149 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 145.50 radiation 10.0 30 < th dose dependent rect. 11 1
10 146.21 radiation 10.0 30 < th dose independent rect. 11 1
68 158.07 atmosphere 1015.0 1440 < th dose independent rect. 13 1
69 158.16 atmosphere 1015.0 1440 > th dose independent rect. 12 1
72 158.16 atmosphere 1015.0 1440 > th dose dependent rect. 12 1
105 158.45 atmosphere 1010.0 720 > th dose dependent rect. 1 1
111 158.67 atmosphere 1015.0 1440 < th dose independent rect. 12 6
153 160.29 wind 1.0 30 < th dose dependent rect. 2 2
169 160.99 wind 1.0 30 < th dose independent rect. 3 1
229 162.30 temperature 25.0 10 < th dose dependent rect. 12 1
261 162.74 atmosphere 1010.0 720 > th dose independent rect. 1 1
325 163.59 precipitation 0.1 90 > th dose independent rect. 21 2
326 163.59 precipitation 0.1 90 > th dose dependent rect. 21 2
370 164.19 atmosphere 1015.0 1440 < th dose independent rect. 9 11
376 164.21 atmosphere 1015.0 1440 < th dose independent rect. 5 15
378 164.21 atmosphere 1015.0 1440 < th dose independent rect. 1 19
392 164.28 atmosphere 1015.0 1440 < th dose independent sin 23 NA
459 164.38 wind 1.0 30 < th dose dependent rect. 22 6
460 164.38 wind 1.0 30 < th dose dependent rect. 17 11
474 164.44 atmosphere 1010.0 30 < th dose independent rect. 8 13
475 164.44 temperature 30.0 4320 > th dose dependent rect. 8 1
493 164.46 radiation 10.0 90 < th dose independent rect. 17 19
498 164.50 temperature 20.0 30 > th dose dependent rect. 21 11
501 164.51 temperature 25.0 90 > th dose independent rect. 21 11
511 164.58 radiation 10.0 90 < th dose independent rect. 21 15
513 164.58 radiation 10.0 90 < th dose independent rect. 19 17
528 164.65 temperature 25.0 90 > th dose independent rect. 21 2
537 164.70 radiation 10.0 90 < th dose independent rect. 10 17
550 164.76 temperature 25.0 30 > th dose independent rect. 20 13
555 164.77 atmosphere 1010.0 10 > th dose independent rect. 11 1
622 164.77 wind 1.0 30 < th dose dependent rect. 10 18
635 164.78 wind 1.0 30 < th dose dependent rect. 12 16
651 164.81 temperature 25.0 90 > th dose independent rect. 3 5
666 164.82 wind 1.0 30 < th dose dependent rect. 7 21
684 164.91 atmosphere 1015.0 1440 > th dose independent sin 22 NA
690 164.93 temperature 25.0 90 > th dose independent rect. 6 2
700 164.96 temperature 25.0 90 > th dose dependent rect. 3 5
712 164.99 wind 1.0 30 < th dose independent rect. 24 4
730 165.06 temperature 25.0 90 > th dose dependent rect. 6 1
736 165.07 radiation 10.0 90 < th dose independent rect. 10 13
814 165.20 temperature 25.0 10 > th dose dependent rect. 6 2
840 165.21 wind 1.0 1440 < th dose dependent rect. 24 18
928 165.30 temperature 25.0 30 > th dose dependent rect. 24 9
940 165.33 temperature 25.0 30 > th dose independent rect. 18 15
949 165.34 radiation 10.0 90 < th dose independent rect. 6 22
950 165.34 wind 1.0 4320 < th dose dependent rect. 6 2
960 165.37 atmosphere 1015.0 1440 < th dose independent rect. 12 19
969 165.38 atmosphere 1015.0 1440 < th dose independent rect. 12 14
987 165.40 temperature 30.0 4320 > th dose independent rect. 8 1