BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0538900 Os04g0538900|Os04g0538900
(175 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G15380.1 | chr1:5290955-5292287 FORWARD LENGTH=175 157 2e-39
AT2G28420.1 | chr2:12157946-12158500 FORWARD LENGTH=185 152 1e-37
AT1G80160.1 | chr1:30151101-30151930 FORWARD LENGTH=168 147 2e-36
AT2G32090.1 | chr2:13644500-13645608 FORWARD LENGTH=136 64 4e-11
>AT1G15380.1 | chr1:5290955-5292287 FORWARD LENGTH=175
Length = 174
Score = 157 bits (398), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 82/167 (49%), Positives = 109/167 (65%), Gaps = 16/167 (9%)
Query: 16 LVRLNHVSFQCTSVEKSVDFYRRVLGFELIKRPESLNFNGAWLYKYGMGIHLLQRGDDAD 75
L LNHVS C SV++S++FY++VLGF I+RPESLNF GAWL+ +G+GIHLL
Sbjct: 11 LTSLNHVSVLCRSVDESMNFYQKVLGFIPIRRPESLNFEGAWLFGHGIGIHLL------- 63
Query: 76 GCSIPTRPLP---AINPMGNHVSFQCSDMAVMKARLRAMDREFVVRKVWDGETVVDQLFF 132
C+ LP AINP NH+SFQC M V++ +L M ++V V +G VDQLFF
Sbjct: 64 -CAPEPEKLPKKTAINPKDNHISFQCESMGVVEKKLEEMGIDYVRALVEEGGIQVDQLFF 122
Query: 133 HDPDGNMIEVCNCENLPVIPLI-----VASTPGLPELLPPAMQTNVH 174
HDPDG MIE+CNC++LPV+PL+ S L +++ P QT +H
Sbjct: 123 HDPDGFMIEICNCDSLPVVPLVGEMARSCSRVKLHQMVQPQPQTQIH 169
>AT2G28420.1 | chr2:12157946-12158500 FORWARD LENGTH=185
Length = 184
Score = 152 bits (383), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 75/158 (47%), Positives = 104/158 (65%), Gaps = 5/158 (3%)
Query: 7 DPAVAASVPLVRLNHVSFQCTSVEKSVDFYRRVLGFELIKRPESLNFNGAWLYKYGMGIH 66
D + + PL+ LNHVS C V+KS++FY +VLGF I+RP S +F+GAWL+ YG+GIH
Sbjct: 9 DDELNSKPPLMALNHVSRLCKDVKKSLEFYTKVLGFVEIERPASFDFDGAWLFNYGVGIH 68
Query: 67 LLQRGDDADGCSIPTRPLPAINPMGNHVSFQCSDMAVMKARLRAMDREFVVRKVWD-GET 125
L+Q D D T L +PM NH+SFQC DM ++ RL+ + +++ R V D +
Sbjct: 69 LVQ-AKDQDKLPSDTDHL---DPMDNHISFQCEDMEALEKRLKEVKVKYIKRTVGDEKDA 124
Query: 126 VVDQLFFHDPDGNMIEVCNCENLPVIPLIVASTPGLPE 163
+DQLFF+DPDG M+E+CNCENL ++P A LPE
Sbjct: 125 AIDQLFFNDPDGFMVEICNCENLELVPCHSADAIRLPE 162
>AT1G80160.1 | chr1:30151101-30151930 FORWARD LENGTH=168
Length = 167
Score = 147 bits (372), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 71/137 (51%), Positives = 95/137 (69%), Gaps = 9/137 (6%)
Query: 19 LNHVSFQCTSVEKSVDFYRRVLGFELIKRPESLNFNGAWLYKYGMGIHLLQRGDDADGCS 78
LNH+S C SVE+S+ FY+ VLGF I+RP+S +F+GAWL+ +G+GIHLLQ +
Sbjct: 14 LNHISLLCRSVEESISFYQNVLGFLPIRRPDSFDFDGAWLFGHGIGIHLLQSPE------ 67
Query: 79 IPTRPLPA--INPMGNHVSFQCSDMAVMKARLRAMDREFVVRKVWDGETVVDQLFFHDPD 136
P + L INP NH+SFQC M ++ +L+ M+ E+V V +G VDQLFFHDPD
Sbjct: 68 -PEKLLKKTEINPKDNHISFQCESMEAVEKKLKEMEIEYVRAVVEEGGIQVDQLFFHDPD 126
Query: 137 GNMIEVCNCENLPVIPL 153
MIE+CNC++LPVIPL
Sbjct: 127 AFMIEICNCDSLPVIPL 143
>AT2G32090.1 | chr2:13644500-13645608 FORWARD LENGTH=136
Length = 135
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 8/135 (5%)
Query: 16 LVRLNHVSFQCTSVEKSVDFYRRVLGFELIKRPESLNFNGAWLYKYG-MGIHLLQRGDDA 74
+ L H++ + + + + FY+ V GFE I+ P+ + WL G +H++QR
Sbjct: 1 MASLGHIARESSDITRLAQFYKEVFGFEEIESPDFGDLQVVWLNLPGAFAMHIIQRNPST 60
Query: 75 DGCSIPTRPLPAIN-----PMGNHVSFQCSDMAVMKARLRAMDREFVVRKVWDGETVVDQ 129
+ P A+ PMG+H+ F + L+ E + + DG+ V Q
Sbjct: 61 NLPEGPYSATSAVKDPSHLPMGHHICFSVPNFDSFLHSLKEKGIETFQKSLPDGK--VKQ 118
Query: 130 LFFHDPDGNMIEVCN 144
+FF DPDGN +EV +
Sbjct: 119 VFFFDPDGNGLEVAS 133
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.139 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,240,565
Number of extensions: 177572
Number of successful extensions: 323
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 313
Number of HSP's successfully gapped: 5
Length of query: 175
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 83
Effective length of database: 8,584,297
Effective search space: 712496651
Effective search space used: 712496651
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 108 (46.2 bits)