BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0646100 Os07g0646100|Os07g0646100
(568 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0646100 Protein phosphatase 2C family protein 937 0.0
Os02g0281000 Protein phosphatase 2C family protein 186 3e-47
AK072080 73 7e-13
Os02g0224100 Protein phosphatase 2C-like domain containing ... 72 8e-13
Os11g0417400 Protein phosphatase 2C-like domain containing ... 69 7e-12
>Os07g0646100 Protein phosphatase 2C family protein
Length = 568
Score = 937 bits (2423), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 474/568 (83%), Positives = 474/568 (83%)
Query: 1 MGCAQGKCCVPXXXXXXXXXXXXXXXXXXXXXXXXXPGAGLVLEYATLAVAGLYPDSPGR 60
MGCAQGKCCVP PGAGLVLEYATLAVAGLYPDSPGR
Sbjct: 1 MGCAQGKCCVPRRQRGRGGGGAVGGRGGATLGRVAVPGAGLVLEYATLAVAGLYPDSPGR 60
Query: 61 ESQDAHLVATRFAGHPDLHLFAVXXXXXXXXXXXXXXXXXXLPRLLAXXXXXXXXXXXXX 120
ESQDAHLVATRFAGHPDLHLFAV LPRLLA
Sbjct: 61 ESQDAHLVATRFAGHPDLHLFAVFDGHGACGAACAGFARDALPRLLAGVGVGAGEEGGGR 120
Query: 121 XXXXXDPXXXXXXXXXXXXXEMHAADEVDDSMSXXXXXXXXXXXXXXXXXXXXDSRAVAG 180
DP EMHAADEVDDSMS DSRAVAG
Sbjct: 121 MVVVEDPAAAFREALPAANAEMHAADEVDDSMSGTTAVAALVAGGALHVANVGDSRAVAG 180
Query: 181 VWREGRVAAEELSWDQTPFRADERARVKACGARVMSVEQVEGVRDPEAESWVADEGDPPR 240
VWREGRVAAEELSWDQTPFRADERARVKACGARVMSVEQVEGVRDPEAESWVADEGDPPR
Sbjct: 181 VWREGRVAAEELSWDQTPFRADERARVKACGARVMSVEQVEGVRDPEAESWVADEGDPPR 240
Query: 241 VWARDGLYPGTAFTRSLGDQAAEAVGVIAEPEVKSVEITPAHLFFVVASDGVFEFLSSQD 300
VWARDGLYPGTAFTRSLGDQAAEAVGVIAEPEVKSVEITPAHLFFVVASDGVFEFLSSQD
Sbjct: 241 VWARDGLYPGTAFTRSLGDQAAEAVGVIAEPEVKSVEITPAHLFFVVASDGVFEFLSSQD 300
Query: 301 VVDMNLMQCVNLSAFGLYEASDVPRTGVAAKLMKCLNENGISPASTSKLDVHSQKPNQSM 360
VVDMNLMQCVNLSAFGLYEASDVPRTGVAAKLMKCLNENGISPASTSKLDVHSQKPNQSM
Sbjct: 301 VVDMNLMQCVNLSAFGLYEASDVPRTGVAAKLMKCLNENGISPASTSKLDVHSQKPNQSM 360
Query: 361 TLAYVLFRGSMKLLQWDTEVAAYEDPREACSAIAAESYKLWLEHENRTDDITIIIVHIRD 420
TLAYVLFRGSMKLLQWDTEVAAYEDPREACSAIAAESYKLWLEHENRTDDITIIIVHIRD
Sbjct: 361 TLAYVLFRGSMKLLQWDTEVAAYEDPREACSAIAAESYKLWLEHENRTDDITIIIVHIRD 420
Query: 421 SENPGPAGSQKMNGSSSGAVQPELTVFVPSEASHLNRDAATEMPSSSSGSPTEQHLSCVA 480
SENPGPAGSQKMNGSSSGAVQPELTVFVPSEASHLNRDAATEMPSSSSGSPTEQHLSCVA
Sbjct: 421 SENPGPAGSQKMNGSSSGAVQPELTVFVPSEASHLNRDAATEMPSSSSGSPTEQHLSCVA 480
Query: 481 PSPTHPLLGVGRTSETPKLIESERAMSQPAEASWHQRDDKFLYRKRIPSAGSCCCAMAVV 540
PSPTHPLLGVGRTSETPKLIESERAMSQPAEASWHQRDDKFLYRKRIPSAGSCCCAMAVV
Sbjct: 481 PSPTHPLLGVGRTSETPKLIESERAMSQPAEASWHQRDDKFLYRKRIPSAGSCCCAMAVV 540
Query: 541 LALQSVRHAPVANPLGAVARVFLRAPAD 568
LALQSVRHAPVANPLGAVARVFLRAPAD
Sbjct: 541 LALQSVRHAPVANPLGAVARVFLRAPAD 568
>Os02g0281000 Protein phosphatase 2C family protein
Length = 1086
Score = 186 bits (473), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 106/271 (39%), Positives = 141/271 (52%), Gaps = 15/271 (5%)
Query: 37 PGAGLVLEYATLAVAGLYPDSPGRESQDAHLVATRFAGHPDLHLFAVXXXXXXXXXXXXX 96
P L Y+ L+ G YP+S + +QD+ + T F PD H F V
Sbjct: 101 PLGNYDLRYSYLSQRGYYPESLDKPNQDSFCIHTPFGTSPDDHFFGVFDGHGEYGAQCSQ 160
Query: 97 XXXXXLPRLLAXXXXXXXXXXXXXXXXXXDPXXXXXXXXXXXXXEMHAADEVDDSMSXXX 156
L L D ++HA D +DDSMS
Sbjct: 161 FVKRRLCENLLRDDRFRT-----------DVVQALHSAFLATNSQLHA-DSLDDSMSGTT 208
Query: 157 XXXXXXXXXXXXXXXXXDSRAVAGVWREGRVAAEELSWDQTPFRADERARVKACGARVMS 216
DSRAV R V A +LS DQTP+R DE RVK CGARVM+
Sbjct: 209 AVTVLVRGKTIYIANTGDSRAVIAEKRGEDVVAVDLSIDQTPYRTDELERVKECGARVMT 268
Query: 217 VEQVEGVRDPEAESW---VADEGDPPRVWARDGLYPGTAFTRSLGDQAAEAVGVIAEPEV 273
++Q+EG+++P+ + W +D+GDPPR+W ++G+YPGTAFTRS+GD AE++GV+A PE+
Sbjct: 269 LDQIEGLKNPDVQCWGTEESDDGDPPRLWVQNGMYPGTAFTRSIGDSVAESIGVVANPEI 328
Query: 274 KSVEITPAHLFFVVASDGVFEFLSSQDVVDM 304
+E+ H FFV+ASDGVFEFLSSQ VVDM
Sbjct: 329 FILELNANHPFFVLASDGVFEFLSSQTVVDM 359
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 28/39 (71%), Positives = 36/39 (92%)
Query: 380 VAAYEDPREACSAIAAESYKLWLEHENRTDDITIIIVHI 418
+A Y+DPR+AC+AI AESY+LWL++E RTDDITII+VHI
Sbjct: 360 IAKYKDPRDACAAIVAESYRLWLQYETRTDDITIIVVHI 398
>AK072080
Length = 250
Score = 72.8 bits (177), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 68/132 (51%), Gaps = 16/132 (12%)
Query: 174 DSRAVAGVWRE-GRVAAEELSWDQTPFRADERARVKACGARVMSVEQVEGVRDPEAESWV 232
DSRAV + G + A +L+ D P +E AR+K G RV ++ GV
Sbjct: 120 DSRAVLATMSDTGYLQAVQLTVDHKPSVPEEAARIKRSGGRVFGLKDEPGVM-------- 171
Query: 233 ADEGDPPRVWARDGLYPGTAFTRSLGDQAAEAVGVIAEPEVKSVEITPAHLFFVVASDGV 292
RVW PG A RSLGD + GVI PEV S +T A LF V+A+DGV
Sbjct: 172 -------RVWLPGENSPGLAMARSLGDMRLKRHGVIPAPEVTSRRVTGADLFMVLATDGV 224
Query: 293 FEFLSSQDVVDM 304
++ LS+++VV +
Sbjct: 225 WDVLSNEEVVSI 236
>Os02g0224100 Protein phosphatase 2C-like domain containing protein
Length = 389
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 68/132 (51%), Gaps = 16/132 (12%)
Query: 174 DSRAVAGVWRE-GRVAAEELSWDQTPFRADERARVKACGARVMSVEQVEGVRDPEAESWV 232
DSRAV + G + A +L+ D P +E AR+K G RV ++ GV
Sbjct: 199 DSRAVLATMSDTGYLQAVQLTVDHKPSVPEEAARIKRSGGRVFGLKDEPGVM-------- 250
Query: 233 ADEGDPPRVWARDGLYPGTAFTRSLGDQAAEAVGVIAEPEVKSVEITPAHLFFVVASDGV 292
RVW PG A RSLGD + GVI PEV S +T A LF V+A+DGV
Sbjct: 251 -------RVWLPGENSPGLAMARSLGDMRLKRHGVIPAPEVTSRRVTGADLFMVLATDGV 303
Query: 293 FEFLSSQDVVDM 304
++ LS+++VV +
Sbjct: 304 WDVLSNEEVVSI 315
>Os11g0417400 Protein phosphatase 2C-like domain containing protein
Length = 432
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 68/132 (51%), Gaps = 16/132 (12%)
Query: 174 DSRAVAGVWREG-RVAAEELSWDQTPFRADERARVKACGARVMSVEQVEGVRDPEAESWV 232
DSRAV G + ++ A +L+ D P E R++ C RV + +
Sbjct: 199 DSRAVLGTRDQNDKLVAHQLTVDLKPDHPREARRIRRCNGRVFAHQ-------------- 244
Query: 233 ADEGDPPRVWARDGLYPGTAFTRSLGDQAAEAVGVIAEPEVKSVEITPAHLFFVVASDGV 292
DE D R+W + PG A R+ GD + G+I+ P+V +IT F V+A+DGV
Sbjct: 245 -DEPDVARLWLPNCNSPGLAMARAFGDFCLKDFGLISVPDVTYRQITEKDEFIVLATDGV 303
Query: 293 FEFLSSQDVVDM 304
++ LS+Q+VVD+
Sbjct: 304 WDVLSNQEVVDV 315
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.130 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,227,673
Number of extensions: 708488
Number of successful extensions: 2198
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 2192
Number of HSP's successfully gapped: 7
Length of query: 568
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 462
Effective length of database: 11,501,117
Effective search space: 5313516054
Effective search space used: 5313516054
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 159 (65.9 bits)