Os02g0224100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein phosphatase 2C-like domain containing protein.
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Os02g0224100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein phosphatase 2C-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 71.65 | 0.398 | 12.4 | -0.574 | 1.51 | 0.846 | 0.87 | 0.083 | 0.0962 | 22.1 | 19.87 | 280 | -- | -- |
| 71.68 | 0.394 | 12.4 | -0.585 | 1.51 | 0.836 | 0.88 | -- | 0.098 | 22.1 | 19.9 | 285 | -- | -- |
| 74.57 | 0.402 | 12.4 | -0.619 | 1.52 | 0.87 | -- | 0.0765 | 0.0947 | 22 | 19.76 | 273 | -- | -- |
| 74.6 | 0.402 | 12.4 | -0.633 | 1.51 | 0.875 | -- | -- | 0.0899 | 22 | 19.74 | 273 | -- | -- |
| 186.5 | 0.636 | 12.4 | -0.7 | -- | 1.09 | -- | 0.0824 | -0.0585 | -- | 21.4 | 745 | -- | -- |
| 90.72 | 0.447 | 12.4 | -0.305 | 1.51 | -- | 1.02 | -- | 0.237 | 21.8 | -- | -- | -- | -- |
| 94.69 | 0.456 | 12.4 | -0.344 | 1.51 | -- | -- | -- | 0.235 | 21.7 | -- | -- | -- | -- |
| 177.16 | 0.62 | 12.5 | -0.712 | -- | 1 | -- | -- | -0.142 | -- | 25.18 | 761 | -- | -- |
| 83.74 | 0.426 | 12.4 | -- | 1.5 | 0.655 | -- | -- | 0.178 | 22 | 20.11 | 300 | -- | -- |
| 229.63 | 0.708 | 12.4 | -0.33 | -- | -- | -- | -- | 0.234 | -- | -- | -- | -- | -- |
| 97.8 | 0.463 | 12.4 | -- | 1.5 | -- | -- | -- | 0.274 | 21.7 | -- | -- | -- | -- |
| 187.4 | 0.638 | 12.4 | -- | -- | 0.977 | -- | -- | -0.051 | -- | 25.14 | 761 | -- | -- |
| 232.5 | 0.712 | 12.4 | -- | -- | -- | -- | -- | 0.27 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 70.61 | temperature | 20 | 270 | > th | dose independent | rect. | 13 | 23 |
| 4 | 71.06 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 23 |
| 9 | 71.37 | temperature | 20 | 270 | < th | dose independent | rect. | 10 | 22 |
| 10 | 71.37 | temperature | 20 | 90 | > th | dose independent | rect. | 6 | 23 |
| 21 | 71.74 | temperature | 20 | 270 | < th | dose independent | rect. | 14 | 21 |
| 23 | 71.75 | temperature | 20 | 270 | > th | dose independent | no | NA | NA |
| 24 | 71.75 | temperature | 20 | 270 | < th | dose independent | rect. | 18 | 23 |
| 29 | 71.81 | temperature | 20 | 270 | < th | dose independent | no | NA | NA |
| 36 | 71.84 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 23 |
| 48 | 71.94 | temperature | 20 | 270 | > th | dose independent | rect. | 16 | 17 |
| 94 | 72.49 | temperature | 20 | 270 | < th | dose independent | sin | 10 | NA |
| 116 | 72.73 | temperature | 20 | 720 | > th | dose independent | rect. | 7 | 19 |
| 129 | 72.86 | temperature | 20 | 270 | > th | dose independent | sin | 11 | NA |
| 134 | 72.91 | temperature | 20 | 270 | > th | dose independent | rect. | 23 | 23 |
| 144 | 72.99 | temperature | 20 | 270 | > th | dose independent | rect. | 1 | 23 |
| 149 | 73.04 | temperature | 20 | 720 | > th | dose independent | rect. | 14 | 12 |
| 152 | 73.09 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 12 |
| 165 | 73.23 | temperature | 20 | 270 | > th | dose independent | rect. | 18 | 23 |
| 277 | 74.10 | temperature | 20 | 720 | > th | dose independent | sin | 16 | NA |
| 289 | 74.19 | temperature | 20 | 720 | < th | dose independent | sin | 15 | NA |
| 296 | 74.24 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 5 |
| 310 | 74.31 | temperature | 20 | 720 | < th | dose independent | rect. | 19 | 7 |
| 335 | 74.42 | temperature | 20 | 270 | < th | dose dependent | rect. | 7 | 22 |
| 375 | 74.61 | temperature | 20 | 90 | < th | dose dependent | rect. | 24 | 23 |
| 461 | 74.94 | temperature | 20 | 270 | < th | dose dependent | rect. | 11 | 23 |
| 471 | 74.96 | temperature | 20 | 270 | < th | dose dependent | rect. | 20 | 23 |
| 485 | 74.98 | temperature | 20 | 270 | < th | dose dependent | no | NA | NA |
| 486 | 74.98 | temperature | 20 | 270 | < th | dose dependent | rect. | 13 | 22 |
| 534 | 75.07 | temperature | 25 | 270 | < th | dose dependent | sin | 9 | NA |
| 535 | 75.07 | temperature | 20 | 270 | < th | dose dependent | rect. | 18 | 23 |
| 574 | 75.17 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 14 |
| 608 | 75.25 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 12 |
| 712 | 75.45 | temperature | 25 | 720 | < th | dose dependent | sin | 12 | NA |
| 747 | 75.51 | temperature | 20 | 270 | < th | dose dependent | rect. | 21 | 13 |
| 765 | 75.53 | temperature | 20 | 270 | < th | dose dependent | rect. | 20 | 15 |