Os02g0281000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein phosphatase 2C family protein.
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Os02g0281000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein phosphatase 2C family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38.72 | 0.292 | 11.1 | -0.315 | 1.3 | 0.997 | 0.732 | -0.636 | 0.0163 | 4.72 | 29.9 | 255 | -- | -- |
| 39.02 | 0.291 | 11.1 | -0.427 | 1.3 | 1.02 | 0.55 | -- | -0.0088 | 4.79 | 29.61 | 232 | -- | -- |
| 39.77 | 0.294 | 11.1 | -0.391 | 1.3 | 1.01 | -- | -0.177 | -0.00773 | 4.76 | 30.05 | 226 | -- | -- |
| 39.79 | 0.294 | 11.1 | -0.42 | 1.29 | 1.03 | -- | -- | -0.0122 | 4.76 | 29.91 | 230 | -- | -- |
| 101.85 | 0.47 | 11.1 | -0.118 | -- | 2.3 | -- | 0.0363 | 0.183 | -- | 32.22 | 231 | -- | -- |
| 52.4 | 0.339 | 11.2 | -0.677 | 1.6 | -- | 0.652 | -- | -0.213 | 4.65 | -- | -- | -- | -- |
| 53.52 | 0.343 | 11.2 | -0.681 | 1.61 | -- | -- | -- | -0.217 | 4.63 | -- | -- | -- | -- |
| 101.86 | 0.47 | 11.1 | -0.117 | -- | 2.3 | -- | -- | 0.183 | -- | 32.25 | 231 | -- | -- |
| 44.02 | 0.309 | 11.1 | -- | 1.24 | 1.19 | -- | -- | 0.0641 | 4.78 | 29.71 | 232 | -- | -- |
| 190.87 | 0.646 | 11.2 | -0.619 | -- | -- | -- | -- | -0.174 | -- | -- | -- | -- | -- |
| 65.74 | 0.379 | 11.2 | -- | 1.59 | -- | -- | -- | -0.141 | 4.64 | -- | -- | -- | -- |
| 102.16 | 0.471 | 11.1 | -- | -- | 2.33 | -- | -- | 0.201 | -- | 32.13 | 233 | -- | -- |
| 200.99 | 0.662 | 11.2 | -- | -- | -- | -- | -- | -0.106 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 37.05 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 22 |
| 2 | 37.07 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 22 |
| 7 | 37.51 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 20 |
| 9 | 37.60 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 20 |
| 11 | 37.64 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 19 |
| 19 | 37.74 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 18 |
| 44 | 38.27 | wind | 1 | 43200 | > th | dose dependent | rect. | 23 | 3 |
| 58 | 38.41 | wind | 3 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 59 | 38.42 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 63 | 38.49 | wind | 7 | 43200 | < th | dose dependent | rect. | 23 | 3 |
| 83 | 38.70 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 95 | 38.82 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 98 | 38.84 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 23 |
| 108 | 38.98 | wind | 5 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 118 | 39.03 | temperature | 30 | 10 | < th | dose dependent | rect. | 18 | 18 |
| 120 | 39.05 | wind | 3 | 43200 | < th | dose independent | rect. | 23 | 3 |
| 125 | 39.10 | wind | 3 | 43200 | > th | dose independent | rect. | 23 | 3 |
| 221 | 39.58 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 225 | 39.59 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 15 |
| 228 | 39.60 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 15 |
| 273 | 39.73 | temperature | 20 | 1440 | > th | dose independent | rect. | 17 | 19 |
| 282 | 39.75 | temperature | 20 | 1440 | < th | dose independent | rect. | 17 | 19 |
| 289 | 39.76 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 21 |
| 330 | 39.82 | temperature | 20 | 1440 | < th | dose independent | sin | 6 | NA |
| 357 | 39.85 | temperature | 20 | 1440 | > th | dose independent | sin | 6 | NA |
| 385 | 39.88 | temperature | 20 | 1440 | > th | dose independent | rect. | 9 | 23 |
| 404 | 39.90 | temperature | 20 | 1440 | < th | dose independent | rect. | 9 | 22 |
| 431 | 39.92 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 450 | 39.95 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 454 | 39.95 | wind | 3 | 43200 | < th | dose dependent | rect. | 21 | 7 |
| 465 | 39.97 | wind | 3 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 471 | 39.97 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 480 | 39.99 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 484 | 39.99 | temperature | 20 | 1440 | < th | dose independent | rect. | 17 | 15 |
| 501 | 40.00 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 21 |
| 512 | 40.01 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 513 | 40.01 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 515 | 40.01 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 546 | 40.04 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 23 |
| 554 | 40.05 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 23 |
| 598 | 40.11 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 633 | 40.15 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 714 | 40.22 | temperature | 15 | 270 | > th | dose dependent | sin | 6 | NA |
| 761 | 40.30 | temperature | 20 | 1440 | > th | dose independent | rect. | 17 | 11 |
| 775 | 40.32 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 3 |
| 909 | 40.50 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 20 |
| 929 | 40.53 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 7 |
| 962 | 40.57 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 969 | 40.58 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 23 |