Os07g0646100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein phosphatase 2C family protein.
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Os07g0646100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein phosphatase 2C family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 57.85 | 0.357 | 11.9 | 0.734 | 1.66 | -0.681 | 0.248 | 0.458 | -0.335 | 7.16 | 22.22 | 914 | -- | -- |
| 58.33 | 0.356 | 11.9 | 0.597 | 1.69 | -0.695 | 0.127 | -- | -0.364 | 7.16 | 22.3 | 1036 | -- | -- |
| 57.94 | 0.355 | 11.9 | 0.726 | 1.67 | -0.689 | -- | 0.395 | -0.337 | 7.16 | 22.3 | 967 | -- | -- |
| 58.36 | 0.356 | 11.9 | 0.602 | 1.69 | -0.698 | -- | -- | -0.366 | 7.17 | 22.27 | 1033 | -- | -- |
| 192.95 | 0.647 | 11.9 | 0.942 | -- | -0.998 | -- | 0.488 | -0.186 | -- | 21.9 | 652 | -- | -- |
| 78.46 | 0.415 | 11.9 | 0.361 | 1.73 | -- | 0.133 | -- | -0.601 | 7.4 | -- | -- | -- | -- |
| 78.51 | 0.415 | 11.9 | 0.364 | 1.74 | -- | -- | -- | -0.602 | 7.4 | -- | -- | -- | -- |
| 142.72 | 0.556 | 11.9 | 0.649 | -- | -1.51 | -- | -- | -0.404 | -- | 28.29 | 522 | -- | -- |
| 66.93 | 0.381 | 11.9 | -- | 1.69 | -0.567 | -- | -- | -0.466 | 7.18 | 22.37 | 942 | -- | -- |
| 238.92 | 0.722 | 12 | 0.392 | -- | -- | -- | -- | -0.573 | -- | -- | -- | -- | -- |
| 82 | 0.424 | 11.9 | -- | 1.74 | -- | -- | -- | -0.642 | 7.39 | -- | -- | -- | -- |
| 154.31 | 0.579 | 11.9 | -- | -- | -1.44 | -- | -- | -0.468 | -- | 28.26 | 517 | -- | -- |
| 242.98 | 0.728 | 12 | -- | -- | -- | -- | -- | -0.617 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.53 | temperature | 10 | 270 | > th | dose dependent | rect. | 21 | 21 |
| 2 | 51.68 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 19 |
| 36 | 54.77 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 18 |
| 86 | 56.83 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 95 | 56.96 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 100 | 57.09 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 6 |
| 111 | 57.25 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 19 |
| 115 | 57.31 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 2 |
| 120 | 57.37 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 7 |
| 163 | 57.84 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 232 | 58.23 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 244 | 58.31 | temperature | 10 | 270 | > th | dose dependent | rect. | 8 | 23 |
| 271 | 58.48 | temperature | 30 | 270 | < th | dose dependent | rect. | 16 | 21 |
| 300 | 58.61 | temperature | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 316 | 58.66 | temperature | 15 | 1440 | > th | dose dependent | rect. | 24 | 4 |
| 338 | 58.76 | temperature | 20 | 270 | > th | dose dependent | sin | 1 | NA |
| 349 | 58.80 | temperature | 30 | 1440 | < th | dose dependent | rect. | 24 | 4 |
| 369 | 58.87 | temperature | 30 | 1440 | < th | dose dependent | rect. | 24 | 2 |
| 371 | 58.88 | temperature | 20 | 1440 | < th | dose independent | sin | 11 | NA |
| 388 | 58.91 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 438 | 59.03 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 541 | 59.26 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 645 | 59.45 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 674 | 59.49 | temperature | 15 | 270 | > th | dose dependent | rect. | 8 | 10 |
| 768 | 59.63 | temperature | 30 | 720 | < th | dose dependent | sin | 7 | NA |
| 835 | 59.72 | temperature | 25 | 1440 | < th | dose dependent | sin | 10 | NA |
| 836 | 59.72 | temperature | 30 | 270 | < th | dose dependent | sin | 0 | NA |
| 908 | 59.84 | temperature | 20 | 10 | > th | dose independent | rect. | 23 | 21 |
| 945 | 59.88 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |