BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0632700 Os07g0632700|AK060066
(230 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0632700 emp24/gp25L/p24 family protein 356 8e-99
Os03g0376000 emp24/gp25L/p24 family protein 294 3e-80
Os06g0210100 emp24/gp25L/p24 family protein 172 1e-43
Os02g0768200 emp24/gp25L/p24 family protein 171 5e-43
Os09g0453200 emp24/gp25L/p24 family protein 138 3e-33
>Os07g0632700 emp24/gp25L/p24 family protein
Length = 230
Score = 356 bits (913), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 179/230 (77%), Positives = 179/230 (77%)
Query: 1 MAARRPGXXXXXXXXXXXXXXXXXXXXXXXXXXTARALRFDLESGHTKCISDEIKVNSMV 60
MAARRPG TARALRFDLESGHTKCISDEIKVNSMV
Sbjct: 1 MAARRPGSPAPRWAPWPLLAAAAVLLLLSAAPRTARALRFDLESGHTKCISDEIKVNSMV 60
Query: 61 VGKYHVVGXXXXXXXXXXXXSHRISLRVTSPYGNSVHYAENVPSGNFAFTATEAGDYLAC 120
VGKYHVVG SHRISLRVTSPYGNSVHYAENVPSGNFAFTATEAGDYLAC
Sbjct: 61 VGKYHVVGPDPNFPDNPLPDSHRISLRVTSPYGNSVHYAENVPSGNFAFTATEAGDYLAC 120
Query: 121 FWAPDHKPPVSIGFEFDWRSGVAAKDWSNVAKKGQVDVMEMELKKLEETIKSIHXXXXXX 180
FWAPDHKPPVSIGFEFDWRSGVAAKDWSNVAKKGQVDVMEMELKKLEETIKSIH
Sbjct: 121 FWAPDHKPPVSIGFEFDWRSGVAAKDWSNVAKKGQVDVMEMELKKLEETIKSIHEEMFYL 180
Query: 181 XXXXXXXQNLNKQTNSRMAWLGFLSLGICLSVAGLQLWHLKTFFERKKLL 230
QNLNKQTNSRMAWLGFLSLGICLSVAGLQLWHLKTFFERKKLL
Sbjct: 181 REREEEMQNLNKQTNSRMAWLGFLSLGICLSVAGLQLWHLKTFFERKKLL 230
>Os03g0376000 emp24/gp25L/p24 family protein
Length = 232
Score = 294 bits (753), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 141/207 (68%), Positives = 159/207 (76%), Gaps = 11/207 (5%)
Query: 35 ARALRFDLESGHTKCISDEIKVNSMVVGKYHVV-----------GXXXXXXXXXXXXSHR 83
A ALRFDL+SGHTKCISD+IKV +M VGKYHVV SHR
Sbjct: 26 AAALRFDLQSGHTKCISDDIKVGAMAVGKYHVVVPEGGGSTSSSSSSSSSAQPLLPESHR 85
Query: 84 ISLRVTSPYGNSVHYAENVPSGNFAFTATEAGDYLACFWAPDHKPPVSIGFEFDWRSGVA 143
+SLRVTSPYGNS+HY+ENV SGNFAFTA+EAGDYLACFWAPDH+P ++GFEFDWRSGV+
Sbjct: 86 VSLRVTSPYGNSLHYSENVQSGNFAFTASEAGDYLACFWAPDHRPTATVGFEFDWRSGVS 145
Query: 144 AKDWSNVAKKGQVDVMEMELKKLEETIKSIHXXXXXXXXXXXXXQNLNKQTNSRMAWLGF 203
A+DW+NVAKKGQVD+ME+ELKKLE+TI SIH Q LN++TNSRMAWLGF
Sbjct: 146 ARDWTNVAKKGQVDMMEVELKKLEDTINSIHEEMFYLRAREEEMQELNRRTNSRMAWLGF 205
Query: 204 LSLGICLSVAGLQLWHLKTFFERKKLL 230
SL ICLSVAGLQLWHLK FFERKKLL
Sbjct: 206 FSLAICLSVAGLQLWHLKNFFERKKLL 232
>Os06g0210100 emp24/gp25L/p24 family protein
Length = 232
Score = 172 bits (437), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 81/195 (41%), Positives = 122/195 (62%), Gaps = 6/195 (3%)
Query: 36 RALRFDLESGHTKCISDEIKVNSMVVGKYHVVGXXXXXXXXXXXXSHRISLRVTSPYGNS 95
A+ DL TKC+S+EI+ N +V+ Y ++ ++++VTSPYGN+
Sbjct: 44 EAVWLDLPPTGTKCVSEEIQPNVVVLADYALM------YESHPTAHPTVAVKVTSPYGNT 97
Query: 96 VHYAENVPSGNFAFTATEAGDYLACFWAPDHKPPVSIGFEFDWRSGVAAKDWSNVAKKGQ 155
VH+ EN +G FAFT +EAG+YLACFW + + DW+ G+AAKDW VAKK +
Sbjct: 98 VHHNENATTGQFAFTTSEAGNYLACFWLDSPEKGSGVSLNLDWKIGIAAKDWDTVAKKEK 157
Query: 156 VDVMEMELKKLEETIKSIHXXXXXXXXXXXXXQNLNKQTNSRMAWLGFLSLGICLSVAGL 215
++ +E+EL+KLE ++SIH + ++++TNSR+AW LSLG+C+ V+ L
Sbjct: 158 IEGVELELRKLEAAVESIHHNLLYLKAREAEMRTVSEKTNSRVAWFSILSLGVCIVVSVL 217
Query: 216 QLWHLKTFFERKKLL 230
QLWHL+ FF +KKL+
Sbjct: 218 QLWHLQGFFRKKKLI 232
>Os02g0768200 emp24/gp25L/p24 family protein
Length = 218
Score = 171 bits (432), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 81/197 (41%), Positives = 124/197 (62%), Gaps = 8/197 (4%)
Query: 35 ARALRFDLESGHTKCISDEIKVNSMVVGKYHVVGXXXXXXXXXXXXSH-RISLRVTSPYG 93
A A+ DL TKC+S+EI+ N +V+ Y ++ SH I+++VTSPYG
Sbjct: 29 AEAVWLDLPQSGTKCVSEEIQSNVVVLADYALM-------YESHPSSHPTIAVKVTSPYG 81
Query: 94 NSVHYAENVPSGNFAFTATEAGDYLACFWAPDHKPPVSIGFEFDWRSGVAAKDWSNVAKK 153
N++H+ EN G FAFT +EAG+YLACFW + I DW+ G+AAKDW +AKK
Sbjct: 82 NTLHHNENATVGQFAFTTSEAGNYLACFWIDSAEKGSGISINLDWKIGIAAKDWDVIAKK 141
Query: 154 GQVDVMEMELKKLEETIKSIHXXXXXXXXXXXXXQNLNKQTNSRMAWLGFLSLGICLSVA 213
+++ +E+EL+KLE ++SIH + ++++TN+R+AW LSL +C+ V+
Sbjct: 142 EKIEGVELELRKLEVAVQSIHQNMIYLKAREAEMRTVSEKTNARVAWFSILSLSVCIVVS 201
Query: 214 GLQLWHLKTFFERKKLL 230
LQLWHL+ +F++KKL+
Sbjct: 202 ILQLWHLQGYFQKKKLI 218
>Os09g0453200 emp24/gp25L/p24 family protein
Length = 262
Score = 138 bits (348), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 60/144 (41%), Positives = 95/144 (65%)
Query: 87 RVTSPYGNSVHYAENVPSGNFAFTATEAGDYLACFWAPDHKPPVSIGFEFDWRSGVAAKD 146
+VTSP+G+ VH+ + V +G F+FT EAG+YLACF A + + DWR G+A KD
Sbjct: 119 KVTSPFGDIVHHKQKVSTGQFSFTTAEAGNYLACFSADGRNKRLVVKLNLDWRVGIATKD 178
Query: 147 WSNVAKKGQVDVMEMELKKLEETIKSIHXXXXXXXXXXXXXQNLNKQTNSRMAWLGFLSL 206
W +VAKK +++ +E+EL KLE ++++IH ++ +++TN+R WL +SL
Sbjct: 179 WDSVAKKEKLEGVELELVKLETSVQAIHENLLLLRSKEANMRDTSEKTNARATWLSIISL 238
Query: 207 GICLSVAGLQLWHLKTFFERKKLL 230
+C+ V+ LQLWHL+ +F +KKL+
Sbjct: 239 IVCIIVSVLQLWHLQQYFRKKKLI 262
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.133 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,888,364
Number of extensions: 191156
Number of successful extensions: 359
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 357
Number of HSP's successfully gapped: 5
Length of query: 230
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 133
Effective length of database: 11,971,043
Effective search space: 1592148719
Effective search space used: 1592148719
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 154 (63.9 bits)