BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0623600 Os07g0623600|AK063642
(288 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0623600 Conserved hypothetical protein 583 e-167
Os03g0387800 Conserved hypothetical protein 395 e-110
Os02g0574600 Conserved hypothetical protein 267 8e-72
Os04g0455600 Conserved hypothetical protein 263 1e-70
>Os07g0623600 Conserved hypothetical protein
Length = 288
Score = 583 bits (1502), Expect = e-167, Method: Compositional matrix adjust.
Identities = 288/288 (100%), Positives = 288/288 (100%)
Query: 1 MERPAPVRKSHTSTADLLTWPEGAAQELAAGATPPPNRRPHQPSEAISKVVFGGQVTEEE 60
MERPAPVRKSHTSTADLLTWPEGAAQELAAGATPPPNRRPHQPSEAISKVVFGGQVTEEE
Sbjct: 1 MERPAPVRKSHTSTADLLTWPEGAAQELAAGATPPPNRRPHQPSEAISKVVFGGQVTEEE 60
Query: 61 FESLNKRKPCSAPKWKEMTGSGIFAAEGEVEEDESANASATPVRTVSKNYQAISTISHIS 120
FESLNKRKPCSAPKWKEMTGSGIFAAEGEVEEDESANASATPVRTVSKNYQAISTISHIS
Sbjct: 61 FESLNKRKPCSAPKWKEMTGSGIFAAEGEVEEDESANASATPVRTVSKNYQAISTISHIS 120
Query: 121 FAEEESVSPKKPTSIAEVAKQRELSGTLQSEDESKMKRQISNAKSKELSGHDIFAPPEDP 180
FAEEESVSPKKPTSIAEVAKQRELSGTLQSEDESKMKRQISNAKSKELSGHDIFAPPEDP
Sbjct: 121 FAEEESVSPKKPTSIAEVAKQRELSGTLQSEDESKMKRQISNAKSKELSGHDIFAPPEDP 180
Query: 181 RPRNSANGSTSQTPGKNAQVSTITFGEADTDSVVKTAKKIPEKKLTDLTGNDIFKGDAAP 240
RPRNSANGSTSQTPGKNAQVSTITFGEADTDSVVKTAKKIPEKKLTDLTGNDIFKGDAAP
Sbjct: 181 RPRNSANGSTSQTPGKNAQVSTITFGEADTDSVVKTAKKIPEKKLTDLTGNDIFKGDAAP 240
Query: 241 GTAEKHLSTAKLKEMTGSDIFADGKAPSRDYLGGIRKPPGGESSIALV 288
GTAEKHLSTAKLKEMTGSDIFADGKAPSRDYLGGIRKPPGGESSIALV
Sbjct: 241 GTAEKHLSTAKLKEMTGSDIFADGKAPSRDYLGGIRKPPGGESSIALV 288
>Os03g0387800 Conserved hypothetical protein
Length = 290
Score = 395 bits (1014), Expect = e-110, Method: Compositional matrix adjust.
Identities = 214/295 (72%), Positives = 241/295 (81%), Gaps = 12/295 (4%)
Query: 1 MERPAPVRKSHTSTADLLTWPEGAAQ-ELAAGATPPPNRRPHQPSEAISKVVFGGQVTEE 59
MERPAPVRKSHTSTADLL WP+ Q + A +TP P RRPHQPSEA+ KVVFGGQVTEE
Sbjct: 1 MERPAPVRKSHTSTADLLAWPQQQHQPDGHAASTPSPARRPHQPSEALRKVVFGGQVTEE 60
Query: 60 EFESLNKRKPCSAPKWKEMTGSGIFAA--EGEVEEDESANASATPVRTVSKNYQAISTIS 117
E ESLNKRKPCSAPKWKEMTGSGIFAA +GE EE SA A +NYQ + T+S
Sbjct: 61 EAESLNKRKPCSAPKWKEMTGSGIFAAGADGEAEEPGSAAAPGR---AAPRNYQPV-TVS 116
Query: 118 HISFAEEESVSPKKPTSIAEVAKQRELSGTLQSEDESKMKRQISNAKSKELSGHDIFAPP 177
HISFAE+ SV PKKPTS+AEVAKQRELSGTLQSE +SKMK+QISNAKSKELSGH +F P
Sbjct: 117 HISFAEDGSVPPKKPTSVAEVAKQRELSGTLQSEADSKMKKQISNAKSKELSGHGLFDP- 175
Query: 178 EDPRP---RNSANGS-TSQTPGKNAQVSTITFGEADTDSVVKTAKKIPEKKLTDLTGNDI 233
+D RP RN+ANG+ S TP +NA VS+ +FGEA+TDSV KTAKKI KK TDLTGN+I
Sbjct: 176 QDVRPNGARNTANGTGASHTPVRNANVSSFSFGEANTDSVTKTAKKITGKKFTDLTGNNI 235
Query: 234 FKGDAAPGTAEKHLSTAKLKEMTGSDIFADGKAPSRDYLGGIRKPPGGESSIALV 288
FKGD AP +AEKHLSTAKLKEMTGS+IFA+G+AP+R+Y G RKPPGGESSIALV
Sbjct: 236 FKGDEAPASAEKHLSTAKLKEMTGSNIFAEGQAPTREYHSGNRKPPGGESSIALV 290
>Os02g0574600 Conserved hypothetical protein
Length = 310
Score = 267 bits (682), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 165/315 (52%), Positives = 203/315 (64%), Gaps = 32/315 (10%)
Query: 1 MERPAPVRKSHTSTADLLTWPEGAAQE---LAAGATPPPNRRPH-QPSEAISKVVFGGQV 56
MER PVRK+H STA LL+W E + AAGA PP+ RP +P+ I+ +FG V
Sbjct: 1 MERAVPVRKTHASTAGLLSWSESPGPDNAAAAAGAAAPPSSRPSLKPAGGITPAMFGAPV 60
Query: 57 TEEEFESLNKRKPCSAPKWKEMTGSGIFAAEGEVEEDESANA-SATPVRTVSKNYQ-AIS 114
T+ E E L KRK CS K KEMTGSGIF+A+G + E+ + S P +T + YQ ++
Sbjct: 61 TDLEAEDLTKRKMCSGSKMKEMTGSGIFSAQGANGDSETGSGDSNPPSKTSLRMYQQTVT 120
Query: 115 TISHISFAEEESVSPKKPTSIAEVAKQRELSGTLQSEDESKMKRQISNAKSKELSGHDIF 174
IS ISF+ E SVSPKKP+S+ EVAKQRELSGTL+SE ++K+K+Q S AKSKELSG DIF
Sbjct: 121 GISQISFSAEGSVSPKKPSSLPEVAKQRELSGTLESEADAKLKKQNSEAKSKELSGSDIF 180
Query: 175 APPED---------------------PRPRNSANGSTSQTPGKNAQVSTITFGEADTDSV 213
PP + P+PR+ P S I FGE +
Sbjct: 181 GPPPEIPSRPLAARNLELQGNLDFALPQPRSIHTSVKVSNPAGGP--SNIMFGE---EPA 235
Query: 214 VKTAKKIPEKKLTDLTGNDIFKGDAAPGTAEKHLSTAKLKEMTGSDIFADGKAPSRDYLG 273
VKTAKKI +K +LTGN+IFK +A PG+AEK LSTAKLKEM+GS+IFADGK SRDY G
Sbjct: 236 VKTAKKIHNQKFHELTGNNIFKEEAPPGSAEKSLSTAKLKEMSGSNIFADGKVASRDYFG 295
Query: 274 GIRKPPGGESSIALV 288
G+RKPPGG SSIALV
Sbjct: 296 GVRKPPGGGSSIALV 310
>Os04g0455600 Conserved hypothetical protein
Length = 305
Score = 263 bits (672), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 164/313 (52%), Positives = 202/313 (64%), Gaps = 33/313 (10%)
Query: 1 MERPAPVRKSHTSTADLLTWPEGAAQELAAGATPPPNRRPH-QPSEAISKVVFGGQVTEE 59
MER PVRK HTSTADLLTW AA A+P + RP +P+ I+ +FG V+E+
Sbjct: 1 MERAVPVRKPHTSTADLLTWSATGPDAAAAAASPVASSRPSLKPAGGITPAMFGAPVSEK 60
Query: 60 EFESLNK--RKPCSAPKWKEMTGSGIFAAEGEVEEDESAN-ASATPVRTVSKNYQAISTI 116
E E L+K RK CS K KEMTGSGIFA E ++ E++N A+ T VR Q ++ I
Sbjct: 61 EAEDLSKSERKFCSGSKLKEMTGSGIFAENSENDDSEASNPANKTSVRMYQ---QTVTGI 117
Query: 117 SHISFAEEESVSPKKPTSIAEVAKQRELSGTLQSEDESKMKRQISNAKSKELSGHDIFAP 176
S ISF+ + SVSPKKP+S+ EVAKQRELSGTL+++ E+KM +Q S AKSKELSG DIF P
Sbjct: 118 SQISFSADGSVSPKKPSSLPEVAKQRELSGTLETDAEAKMNKQHSEAKSKELSGSDIFGP 177
Query: 177 PED---------------------PRPRNSANGSTSQTPGKNAQVSTITFGEADTDSVVK 215
P + P+PR+ P S ITF E + VVK
Sbjct: 178 PPEIPARPLAARNMELQGNLDFALPQPRSVHTSVKVSNPAGGP--SNITFSE---EPVVK 232
Query: 216 TAKKIPEKKLTDLTGNDIFKGDAAPGTAEKHLSTAKLKEMTGSDIFADGKAPSRDYLGGI 275
T+KKI +K +LTGN+IFK DA P +AEK LS+AKLKEM+GSDIFADG A RDYLGG+
Sbjct: 233 TSKKIHNQKFQELTGNNIFKEDATPASAEKSLSSAKLKEMSGSDIFADGAAAPRDYLGGV 292
Query: 276 RKPPGGESSIALV 288
RKPPGGESSIAL+
Sbjct: 293 RKPPGGESSIALI 305
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.305 0.123 0.340
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,091,532
Number of extensions: 494461
Number of successful extensions: 1456
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1413
Number of HSP's successfully gapped: 4
Length of query: 288
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 188
Effective length of database: 11,814,401
Effective search space: 2221107388
Effective search space used: 2221107388
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 155 (64.3 bits)