Os04g0455600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0455600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 176.48 | 0.624 | 7.06 | -2.61 | 2.03 | -1.05 | -0.75 | 0.67 | -0.329 | 12.6 | 1010 | 4226 | -- | -- |
| 177.82 | 0.621 | 7.04 | -2.48 | 2.05 | -1.05 | -0.696 | -- | -0.3 | 12.6 | 1010 | 4247 | -- | -- |
| 178.88 | 0.623 | 7.06 | -2.63 | 2.03 | -1.04 | -- | 0.654 | -0.33 | 12.5 | 1010 | 4246 | -- | -- |
| 180.1 | 0.625 | 7.04 | -2.49 | 2.04 | -1.06 | -- | -- | -0.299 | 12.6 | 1010 | 4237 | -- | -- |
| 438.03 | 0.975 | 7.09 | -2.71 | -- | -1.02 | -- | 0.713 | -0.364 | -- | 1010 | 4534 | -- | -- |
| 210.6 | 0.68 | 6.99 | -2.18 | 2.01 | -- | -0.71 | -- | -0.0847 | 12.5 | -- | -- | -- | -- |
| 212.76 | 0.683 | 6.99 | -2.21 | 2.02 | -- | -- | -- | -0.0882 | 12.5 | -- | -- | -- | -- |
| 436.9 | 0.974 | 7.09 | -2.77 | -- | -0.966 | -- | -- | -0.367 | -- | 1011 | 7290 | -- | -- |
| 325.68 | 0.841 | 6.95 | -- | 2.06 | -0.899 | -- | -- | 0.119 | 12.5 | 1014 | 3796 | -- | -- |
| 468 | 1.01 | 7.03 | -2.28 | -- | -- | -- | -- | -0.122 | -- | -- | -- | -- | -- |
| 341.17 | 0.864 | 6.94 | -- | 2.05 | -- | -- | -- | 0.158 | 12.5 | -- | -- | -- | -- |
| 593.73 | 1.13 | 6.99 | -- | -- | -0.788 | -- | -- | 0.0557 | -- | 1014 | 4049 | -- | -- |
| 604.72 | 1.15 | 6.98 | -- | -- | -- | -- | -- | 0.131 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 166.51 | wind | 9.0 | 43200 | < th | dose independent | rect. | 24 | 2 |
| 2 | 168.73 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 18 | 6 |
| 6 | 169.45 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 7 | 169.63 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 11 | 3 |
| 11 | 170.50 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 15 | 171.01 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 6 | 12 |
| 21 | 171.32 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 2 | 3 |
| 44 | 172.66 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 45 | 172.70 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 16 | 13 |
| 49 | 172.77 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 16 | 13 |
| 51 | 172.79 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 17 | 9 |
| 54 | 172.80 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 17 | 9 |
| 55 | 172.80 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 56 | 172.80 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 18 | 4 |
| 57 | 172.80 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 16 | 8 |
| 60 | 172.85 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 18 | 5 |
| 61 | 172.86 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 18 | 5 |
| 62 | 172.87 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 17 | 6 |
| 64 | 172.92 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 65 | 172.92 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 72 | 173.07 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 11 | 3 |
| 78 | 173.32 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 88 | 173.32 | radiation | 1.0 | 14400 | > th | dose dependent | rect. | 4 | 1 |
| 100 | 173.39 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 101 | 173.39 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 103 | 173.42 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 114 | 173.62 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 149 | 174.11 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 152 | 174.18 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 6 | 20 |
| 195 | 174.79 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 201 | 174.86 | atmosphere | 995.0 | 43200 | > th | dose independent | sin | 13 | NA |
| 222 | 175.00 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 233 | 175.08 | atmosphere | 995.0 | 43200 | < th | dose independent | sin | 13 | NA |
| 250 | 175.19 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 4 | 11 |
| 299 | 175.45 | atmosphere | 1010.0 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 304 | 175.47 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 15 | 9 |
| 320 | 175.56 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 336 | 175.60 | atmosphere | 1005.0 | 43200 | > th | dose independent | sin | 6 | NA |
| 337 | 175.60 | atmosphere | 1005.0 | 43200 | < th | dose independent | sin | 6 | NA |
| 355 | 175.65 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 15 | 16 |
| 373 | 175.71 | atmosphere | 1010.0 | 4320 | > th | dose independent | rect. | 10 | 1 |
| 399 | 175.77 | atmosphere | 1010.0 | 43200 | < th | dose dependent | rect. | 6 | 2 |
| 412 | 175.81 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 509 | 175.92 | atmosphere | 1010.0 | 43200 | < th | dose dependent | rect. | 24 | 10 |
| 529 | 175.95 | atmosphere | 1010.0 | 43200 | < th | dose dependent | rect. | 20 | 14 |
| 547 | 175.99 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 22 | 8 |
| 627 | 176.08 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 23 | 2 |
| 634 | 176.09 | atmosphere | 1010.0 | 43200 | < th | dose dependent | sin | 8 | NA |
| 648 | 176.10 | atmosphere | 1010.0 | 4320 | > th | dose dependent | rect. | 16 | 19 |
| 661 | 176.12 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 737 | 176.19 | atmosphere | 1010.0 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 904 | 176.34 | atmosphere | 1010.0 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 927 | 176.37 | atmosphere | 1010.0 | 4320 | < th | dose independent | rect. | 10 | 1 |
| 939 | 176.38 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 989 | 176.41 | atmosphere | 1010.0 | 4320 | > th | dose dependent | sin | 12 | NA |