BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0455600 Os04g0455600|AK103788
(305 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G39860.1 | chr4:18499909-18501472 FORWARD LENGTH=300 323 9e-89
AT1G78150.3 | chr1:29404996-29406341 FORWARD LENGTH=304 236 1e-62
AT1G35780.1 | chr1:13277778-13280113 REVERSE LENGTH=287 236 1e-62
AT2G22270.1 | chr2:9463765-9465282 FORWARD LENGTH=329 200 9e-52
>AT4G39860.1 | chr4:18499909-18501472 FORWARD LENGTH=300
Length = 299
Score = 323 bits (827), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 171/305 (56%), Positives = 204/305 (66%), Gaps = 6/305 (1%)
Query: 1 MERAVPVRKPHTSTADLLTWXXXXXXXXXXXXXXXXXXXXXLKPAGGITPAMFGAPVSEK 60
MER PVR PHTSTADLL+W +P+ GI+ + G ++++
Sbjct: 1 MERNTPVRNPHTSTADLLSWSETPPPPHHSTPSAARSH----QPSDGISKILGGGQITDE 56
Query: 61 EAEDLSKSERKFCSGSKLKEMTGSGIFAENSENDDSEASNPANKTSVRMYQQTVTGISQI 120
EA+ L+K K CSG KLKEMTGSGIF + + + KT +R YQQT+ G+SQI
Sbjct: 57 EAQSLNK--LKNCSGYKLKEMTGSGIFTDKGKVGSESDATTDPKTGLRYYQQTLNGMSQI 114
Query: 121 SFSADGSVSPKKPSSLPEVAKQRELSGTLETDAEAKMNKQHSEAKSKELSGSDIFGPPPE 180
SFSADG+VSPKKP++L EVAKQRELSG L T+A+ K NKQ S AK +E+SG DIF PP E
Sbjct: 115 SFSADGNVSPKKPTTLTEVAKQRELSGNLLTEADLKSNKQISSAKIEEISGHDIFAPPSE 174
Query: 181 IPARPLAARNMELQGNLDFALPQPRSVHTSVKVSNPAGGPSNITFSEEPVVKTSKKIHNQ 240
I R L A E +GN D P PR++ TSVKVSNPAGG SNI FSEEPVVKTSKKIHNQ
Sbjct: 175 IQPRSLVAAQQEARGNRDMGEPAPRNLRTSVKVSNPAGGQSNILFSEEPVVKTSKKIHNQ 234
Query: 241 KFQELTGNNIFKEDATPXXXXXXXXXXXXXXMSGSDIFADGAAAPRDYLGGVRKPPGGES 300
KFQELTGN IFK D +P MSG++IFADG + RDY GGVRKPPGGES
Sbjct: 235 KFQELTGNGIFKGDESPGSADKQLSSAKLREMSGNNIFADGKSESRDYFGGVRKPPGGES 294
Query: 301 SIALI 305
SI+L+
Sbjct: 295 SISLV 299
>AT1G78150.3 | chr1:29404996-29406341 FORWARD LENGTH=304
Length = 303
Score = 236 bits (601), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 138/332 (41%), Positives = 184/332 (55%), Gaps = 56/332 (16%)
Query: 1 MERAVPVRKPHTSTADLLTWXXXXXXXXXXXXXXXXXXXXXLKPAGGITPAMFGAPVSEK 60
MER+ PVRKPHTSTADLLTW +P+ GI+ +FG V+++
Sbjct: 1 MERSTPVRKPHTSTADLLTWSEVPPPDSPSSASRSAVRSH--QPSDGISKVVFGGQVTDE 58
Query: 61 EAEDLSKSE---------------------------RKFCSGSKLKEMTGSGIFAENSEN 93
E E L++ RK CS K+KE+TGSGIF+ N ++
Sbjct: 59 EVESLNRRILDDAFDSFMRLVIYTNVKTCENVYDVIRKPCSEHKMKEITGSGIFSRNEKD 118
Query: 94 DDSEASNPANKTSVRMYQQTVTGISQISFSADGSVSPKKPSSLPEVAKQRELSGTLETDA 153
D SE + +YQQ V GISQISF + ++SPKKP+++PEVAKQRELSGT+E ++
Sbjct: 119 DASEP--------LPVYQQAVNGISQISFGEEENLSPKKPATVPEVAKQRELSGTMENES 170
Query: 154 EAKMNKQHSEAKSKELSGSDIFGPPPEIPARPLAARNMELQGNLDFALPQPRSVHTSVKV 213
K+ KQ S+AK KE+SG +IF PPPEI R R + L+ N +
Sbjct: 171 ANKLQKQLSDAKYKEISGQNIFAPPPEIKPRSGTNRALALKDNFNL-------------- 216
Query: 214 SNPAGGPSNITFSEEPVVKTSKKIHNQKFQELTGNNIFKEDATPXXXXXXXXXXXXXXMS 273
G + T E+ VKT+KKI+++KF EL+GN+IFK DA +
Sbjct: 217 -----GAESQTAEEDSSVKTAKKIYDKKFAELSGNDIFKGDAASSNVEKHLSQAKLKEIG 271
Query: 274 GSDIFADGAAAPRDYLGGVRKPPGGESSIALI 305
G++IFADG RDYLGGVRKPPGGE+SIAL+
Sbjct: 272 GNNIFADGKVEARDYLGGVRKPPGGETSIALV 303
>AT1G35780.1 | chr1:13277778-13280113 REVERSE LENGTH=287
Length = 286
Score = 236 bits (601), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 142/311 (45%), Positives = 181/311 (58%), Gaps = 31/311 (9%)
Query: 1 MERAVPVRKPHTSTADLLTWXXXXXXXXXXXXXXXXXXXXXLKPAGGITPAMFGAPVSEK 60
ME+ PVRKPH STADLLTW +P+ GI+ +FG V+++
Sbjct: 1 MEKNTPVRKPHMSTADLLTWPENQPFESPAAVSSRSAARSH-QPSDGISKVVFGGQVTDE 59
Query: 61 EAEDLSKSERKFCSGSKLKEMTGSGIFAENSENDDSE--ASNPANKTSVRMYQQTVTGI- 117
E E L+K RK CS K+KE+TGSGIF+ ENDDSE ++N A R +QQ I
Sbjct: 60 EVESLNK--RKPCSNYKMKEITGSGIFSVYEENDDSELASANSATNGKSRTFQQPPAAIM 117
Query: 118 SQISFSADGSVSPKKPSSLPEVAKQRELSGTLETDAEAKMNKQHSEAKSKELSGSDIFGP 177
S ISF + V+PKKP+++PEVAKQRELSGTLE ++AK+NKQ S+AK KELSG +IF P
Sbjct: 118 SHISFGEEEIVTPKKPATVPEVAKQRELSGTLEYQSDAKLNKQFSDAKCKELSGHNIFAP 177
Query: 178 PPEIPARPLAARNMELQGNLDFALPQPRSVHTSVKVSNPAGGPSNITFSEEPVVKTSKKI 237
PPEI RP R + + N D G S+ E +KT+KKI
Sbjct: 178 PPEIKLRP-TVRALAYKDNFDL-------------------GESDTKPDGE--LKTAKKI 215
Query: 238 HNQKFQELTGNNIFKEDATPXXXXXXXXXXXXXXM---SGSDIFADGAAAPRDYLGGVRK 294
++KF +L+GNN+FK D + + SG+DIFAD A RDY GGVRK
Sbjct: 216 ADRKFTDLSGNNVFKSDVSSPSSATAERLLSTAKLKEISGNDIFADAKAQSRDYFGGVRK 275
Query: 295 PPGGESSIALI 305
PPGGESSIAL+
Sbjct: 276 PPGGESSIALV 286
>AT2G22270.1 | chr2:9463765-9465282 FORWARD LENGTH=329
Length = 328
Score = 200 bits (508), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 135/335 (40%), Positives = 174/335 (51%), Gaps = 53/335 (15%)
Query: 10 PHTSTADLLTWXXXXXXXXXXXXXXXXXXXXXLKPAGGITPAMFGA-PVSEKEAEDLSK- 67
PH STADLL+W +P+ G+ + G ++ E + L+
Sbjct: 8 PHHSTADLLSWSEIRRPDYSTAANRSN------QPSDGMNDVLGGGGQITNAETKSLNTN 61
Query: 68 -SERKFCSGSKLKEMTGSGIFAENSENDDSEASNPANKTSVRMYQQTVTGIS-------- 118
S RK CSG KLKEMTGS IF+++ + D P ++T + +Q ++ IS
Sbjct: 62 VSHRKNCSGHKLKEMTGSDIFSDDGKYD------PNHQTRIHYHQDQLSQISFSGEENAT 115
Query: 119 -----------------------QISFSADGSVSPKKPSSLPEVAKQRELSGTLETDAEA 155
QISFS + +V+PKKP++L E AKQ+ELS T+ET A++
Sbjct: 116 TPMNGKDDPNHQTRIHYHQDQRSQISFSGEENVTPKKPTTLNEAAKQKELSRTVETQADS 175
Query: 156 KM-NKQHSEAKSKELSGSDIFGPPPEIPARPL-AARNMELQGNLDFALPQPRSVHTSVKV 213
K KQ S K+K +SG DIF P P R A E++GN + PRS SVK
Sbjct: 176 KCKKKQISNTKNKAMSGHDIFASPESQPRRLFGGATQSEVKGNKNTEESAPRSSRASVKT 235
Query: 214 SNPAGGPSNITFSEEPVVKTSKKIHNQK--FQELTGNNIFKEDAT-PXXXXXXXXXXXXX 270
SN G SN FSEE VVK+SKKIHNQK FQ LT N IFK D P
Sbjct: 236 SN--GQSSNRLFSEEHVVKSSKKIHNQKSQFQGLTSNGIFKSDKIPPGYSEKMQSSAKKR 293
Query: 271 XMSGSDIFADGAAAPRDYLGGVRKPPGGESSIALI 305
MSG +IFADG + RDY GG R+PPGGESSI+L+
Sbjct: 294 EMSGHNIFADGKSEYRDYYGGARRPPGGESSISLV 328
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.307 0.125 0.349
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,257,883
Number of extensions: 251054
Number of successful extensions: 775
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 739
Number of HSP's successfully gapped: 4
Length of query: 305
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 207
Effective length of database: 8,419,801
Effective search space: 1742898807
Effective search space used: 1742898807
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 111 (47.4 bits)