BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0455600 Os04g0455600|AK103788
         (305 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0455600  Conserved hypothetical protein                      538   e-153
Os02g0574600  Conserved hypothetical protein                      434   e-122
Os07g0623600  Conserved hypothetical protein                      236   2e-62
Os03g0387800  Conserved hypothetical protein                      216   2e-56

>Os04g0455600 Conserved hypothetical protein
          Length = 305

 Score =  538 bits (1385), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 270/305 (88%), Positives = 270/305 (88%)

Query: 1   MERAVPVRKPHTSTADLLTWXXXXXXXXXXXXXXXXXXXXXLKPAGGITPAMFGAPVSEK 60
           MERAVPVRKPHTSTADLLTW                     LKPAGGITPAMFGAPVSEK
Sbjct: 1   MERAVPVRKPHTSTADLLTWSATGPDAAAAAASPVASSRPSLKPAGGITPAMFGAPVSEK 60

Query: 61  EAEDLSKSERKFCSGSKLKEMTGSGIFAENSENDDSEASNPANKTSVRMYQQTVTGISQI 120
           EAEDLSKSERKFCSGSKLKEMTGSGIFAENSENDDSEASNPANKTSVRMYQQTVTGISQI
Sbjct: 61  EAEDLSKSERKFCSGSKLKEMTGSGIFAENSENDDSEASNPANKTSVRMYQQTVTGISQI 120

Query: 121 SFSADGSVSPKKPSSLPEVAKQRELSGTLETDAEAKMNKQHSEAKSKELSGSDIFGPPPE 180
           SFSADGSVSPKKPSSLPEVAKQRELSGTLETDAEAKMNKQHSEAKSKELSGSDIFGPPPE
Sbjct: 121 SFSADGSVSPKKPSSLPEVAKQRELSGTLETDAEAKMNKQHSEAKSKELSGSDIFGPPPE 180

Query: 181 IPARPLAARNMELQGNLDFALPQPRSVHTSVKVSNPAGGPSNITFSEEPVVKTSKKIHNQ 240
           IPARPLAARNMELQGNLDFALPQPRSVHTSVKVSNPAGGPSNITFSEEPVVKTSKKIHNQ
Sbjct: 181 IPARPLAARNMELQGNLDFALPQPRSVHTSVKVSNPAGGPSNITFSEEPVVKTSKKIHNQ 240

Query: 241 KFQELTGNNIFKEDATPXXXXXXXXXXXXXXMSGSDIFADGAAAPRDYLGGVRKPPGGES 300
           KFQELTGNNIFKEDATP              MSGSDIFADGAAAPRDYLGGVRKPPGGES
Sbjct: 241 KFQELTGNNIFKEDATPASAEKSLSSAKLKEMSGSDIFADGAAAPRDYLGGVRKPPGGES 300

Query: 301 SIALI 305
           SIALI
Sbjct: 301 SIALI 305



>Os02g0574600 Conserved hypothetical protein
          Length = 310

 Score =  434 bits (1116), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 224/312 (71%), Positives = 245/312 (78%), Gaps = 9/312 (2%)

Query: 1   MERAVPVRKPHTSTADLLTWXXX---XXXXXXXXXXXXXXXXXXLKPAGGITPAMFGAPV 57
           MERAVPVRK H STA LL+W                        LKPAGGITPAMFGAPV
Sbjct: 1   MERAVPVRKTHASTAGLLSWSESPGPDNAAAAAGAAAPPSSRPSLKPAGGITPAMFGAPV 60

Query: 58  SEKEAEDLSKSERKFCSGSKLKEMTGSGIFAENSENDDSEA----SNPANKTSVRMYQQT 113
           ++ EAEDL+K  RK CSGSK+KEMTGSGIF+    N DSE     SNP +KTS+RMYQQT
Sbjct: 61  TDLEAEDLTK--RKMCSGSKMKEMTGSGIFSAQGANGDSETGSGDSNPPSKTSLRMYQQT 118

Query: 114 VTGISQISFSADGSVSPKKPSSLPEVAKQRELSGTLETDAEAKMNKQHSEAKSKELSGSD 173
           VTGISQISFSA+GSVSPKKPSSLPEVAKQRELSGTLE++A+AK+ KQ+SEAKSKELSGSD
Sbjct: 119 VTGISQISFSAEGSVSPKKPSSLPEVAKQRELSGTLESEADAKLKKQNSEAKSKELSGSD 178

Query: 174 IFGPPPEIPARPLAARNMELQGNLDFALPQPRSVHTSVKVSNPAGGPSNITFSEEPVVKT 233
           IFGPPPEIP+RPLAARN+ELQGNLDFALPQPRS+HTSVKVSNPAGGPSNI F EEP VKT
Sbjct: 179 IFGPPPEIPSRPLAARNLELQGNLDFALPQPRSIHTSVKVSNPAGGPSNIMFGEEPAVKT 238

Query: 234 SKKIHNQKFQELTGNNIFKEDATPXXXXXXXXXXXXXXMSGSDIFADGAAAPRDYLGGVR 293
           +KKIHNQKF ELTGNNIFKE+A P              MSGS+IFADG  A RDY GGVR
Sbjct: 239 AKKIHNQKFHELTGNNIFKEEAPPGSAEKSLSTAKLKEMSGSNIFADGKVASRDYFGGVR 298

Query: 294 KPPGGESSIALI 305
           KPPGG SSIAL+
Sbjct: 299 KPPGGGSSIALV 310



>Os07g0623600 Conserved hypothetical protein
          Length = 288

 Score =  236 bits (601), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 148/313 (47%), Positives = 182/313 (58%), Gaps = 33/313 (10%)

Query: 1   MERAVPVRKPHTSTADLLTWXXXXXXXXXXXXXXXXXXXXXLKPAGGITPAMFGAPVSEK 60
           MER  PVRK HTSTADLLTW                      +P+  I+  +FG  V+E+
Sbjct: 1   MERPAPVRKSHTSTADLLTWPEGAAQELAAGATPPPNRRPH-QPSEAISKVVFGGQVTEE 59

Query: 61  EAEDLSKSERKFCSGSKLKEMTGSGIFAENSENDDSEASNPANKTSVRMYQ---QTVTGI 117
           E E L+K  RK CS  K KEMTGSGIFA   E ++ E++N A+ T VR      Q ++ I
Sbjct: 60  EFESLNK--RKPCSAPKWKEMTGSGIFAAEGEVEEDESAN-ASATPVRTVSKNYQAISTI 116

Query: 118 SQISFSADGSVSPKKPSSLPEVAKQRELSGTLETDAEAKMNKQHSEAKSKELSGSDIFGP 177
           S ISF+ + SVSPKKP+S+ EVAKQRELSGTL+++ E+KM +Q S AKSKELSG DIF P
Sbjct: 117 SHISFAEEESVSPKKPTSIAEVAKQRELSGTLQSEDESKMKRQISNAKSKELSGHDIFAP 176

Query: 178 PPEIPARPLAARNMELQGNLDFALPQPRSVHTSVKVSNPAGGP--SNITFSE---EPVVK 232
           P +                     P+PR+         P      S ITF E   + VVK
Sbjct: 177 PED---------------------PRPRNSANGSTSQTPGKNAQVSTITFGEADTDSVVK 215

Query: 233 TSKKIHNQKFQELTGNNIFKEDATPXXXXXXXXXXXXXXMSGSDIFADGAAAPRDYLGGV 292
           T+KKI  +K  +LTGN+IFK DA P              M+GSDIFADG A  RDYLGG+
Sbjct: 216 TAKKIPEKKLTDLTGNDIFKGDAAPGTAEKHLSTAKLKEMTGSDIFADGKAPSRDYLGGI 275

Query: 293 RKPPGGESSIALI 305
           RKPPGGESSIAL+
Sbjct: 276 RKPPGGESSIALV 288



>Os03g0387800 Conserved hypothetical protein
          Length = 290

 Score =  216 bits (550), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 139/308 (45%), Positives = 173/308 (56%), Gaps = 21/308 (6%)

Query: 1   MERAVPVRKPHTSTADLLTWXXXXXXXXXXXXXXXXXXXXXLKPAGGITPAMFGAPVSEK 60
           MER  PVRK HTSTADLL W                      +P+  +   +FG  V+E+
Sbjct: 1   MERPAPVRKSHTSTADLLAWPQQQHQPDGHAASTPSPARRPHQPSEALRKVVFGGQVTEE 60

Query: 61  EAEDLSKSERKFCSGSKLKEMTGSGIFAENSENDDSEASNPANKTSVRMYQQTVTGISQI 120
           EAE L+K  RK CS  K KEMTGSGIFA  ++ +  E  + A              +S I
Sbjct: 61  EAESLNK--RKPCSAPKWKEMTGSGIFAAGADGEAEEPGSAAAPGRAAPRNYQPVTVSHI 118

Query: 121 SFSADGSVSPKKPSSLPEVAKQRELSGTLETDAEAKMNKQHSEAKSKELSGSDIFGPPPE 180
           SF+ DGSV PKKP+S+ EVAKQRELSGTL+++A++KM KQ S AKSKELSG  +F P   
Sbjct: 119 SFAEDGSVPPKKPTSVAEVAKQRELSGTLQSEADSKMKKQISNAKSKELSGHGLFDP--- 175

Query: 181 IPARPLAARNMELQGNLDFALPQPRSVHTSVKVSNPAGGPSNITFSE---EPVVKTSKKI 237
              RP  ARN     N   A       HT V+ +N     S+ +F E   + V KT+KKI
Sbjct: 176 QDVRPNGARNT---ANGTGA------SHTPVRNAN----VSSFSFGEANTDSVTKTAKKI 222

Query: 238 HNQKFQELTGNNIFKEDATPXXXXXXXXXXXXXXMSGSDIFADGAAAPRDYLGGVRKPPG 297
             +KF +LTGNNIFK D  P              M+GS+IFA+G A  R+Y  G RKPPG
Sbjct: 223 TGKKFTDLTGNNIFKGDEAPASAEKHLSTAKLKEMTGSNIFAEGQAPTREYHSGNRKPPG 282

Query: 298 GESSIALI 305
           GESSIAL+
Sbjct: 283 GESSIALV 290



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.307    0.125    0.349 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,441,416
Number of extensions: 424012
Number of successful extensions: 990
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 957
Number of HSP's successfully gapped: 4
Length of query: 305
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 205
Effective length of database: 11,814,401
Effective search space: 2421952205
Effective search space used: 2421952205
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 156 (64.7 bits)