Os07g0623600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0623600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 133.11 | 0.542 | 9.2 | -1.56 | 0.365 | -2.49 | 0.72 | -3.18 | -0.531 | 3.05 | 0.9393 | 1448 | -- | -- |
| 135.57 | 0.542 | 9.25 | -1.83 | 0.373 | -1.83 | 0.672 | -- | -0.591 | 2.95 | 1.968 | 1447 | -- | -- |
| 134.53 | 0.54 | 9.19 | -1.57 | 0.396 | -2.61 | -- | -3.47 | -0.534 | 2.22 | 0.85 | 1453 | -- | -- |
| 136.62 | 0.544 | 9.25 | -1.86 | 0.474 | -1.95 | -- | -- | -0.593 | 1.9 | 1.95 | 1471 | -- | -- |
| 139.91 | 0.551 | 9.19 | -1.57 | -- | -2.6 | -- | -3.44 | -0.524 | -- | 0.6977 | 1424 | -- | -- |
| 174.98 | 0.62 | 9.19 | -1.45 | 0.354 | -- | 1.01 | -- | -0.34 | 3.58 | -- | -- | -- | -- |
| 177.9 | 0.625 | 9.19 | -1.47 | 0.358 | -- | -- | -- | -0.345 | 2.96 | -- | -- | -- | -- |
| 142.43 | 0.556 | 9.25 | -1.84 | -- | -1.8 | -- | -- | -0.593 | -- | 2.14 | 1413 | -- | -- |
| 215.63 | 0.684 | 9.18 | -- | 0.345 | -0.826 | -- | -- | -0.33 | 2.2 | 8.71 | 1458 | -- | -- |
| 185.28 | 0.636 | 9.19 | -1.45 | -- | -- | -- | -- | -0.336 | -- | -- | -- | -- | -- |
| 234.65 | 0.717 | 9.16 | -- | 0.329 | -- | -- | -- | -0.182 | 2.94 | -- | -- | -- | -- |
| 218.94 | 0.689 | 9.19 | -- | -- | -0.882 | -- | -- | -0.335 | -- | 9.456 | 1387 | -- | -- |
| 240.9 | 0.724 | 9.16 | -- | -- | -- | -- | -- | -0.175 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 124.93 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 3 | 127.23 | radiation | 40 | 14400 | > th | dose dependent | rect. | 15 | 17 |
| 7 | 128.46 | wind | 7 | 43200 | > th | dose independent | rect. | 12 | 4 |
| 8 | 128.48 | wind | 7 | 43200 | < th | dose independent | rect. | 11 | 5 |
| 13 | 128.75 | radiation | 40 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 36 | 129.16 | radiation | 30 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 79 | 129.99 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 118 | 130.70 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 19 |
| 121 | 130.74 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 132 | 131.01 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 135 | 131.09 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 19 |
| 210 | 132.02 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 8 |
| 213 | 132.07 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 11 |
| 220 | 132.16 | wind | 1 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 258 | 132.44 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 11 |
| 279 | 132.63 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 300 | 132.75 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 9 |
| 305 | 132.78 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 20 |
| 336 | 132.99 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 9 |
| 339 | 133.02 | wind | 7 | 43200 | < th | dose independent | sin | 23 | NA |
| 353 | 133.10 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 7 |
| 355 | 133.11 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 12 |
| 361 | 133.13 | temperature | 25 | 1440 | > th | dose dependent | sin | 17 | NA |
| 375 | 133.19 | wind | 7 | 43200 | > th | dose independent | sin | 23 | NA |
| 377 | 133.19 | radiation | 1 | 1440 | < th | dose dependent | rect. | 24 | 19 |
| 383 | 133.22 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 12 |
| 398 | 133.26 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 22 |
| 403 | 133.27 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 404 | 133.27 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 17 |
| 406 | 133.27 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 23 |
| 412 | 133.28 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 421 | 133.31 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 14 |
| 422 | 133.31 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 20 |
| 432 | 133.33 | radiation | 1 | 1440 | < th | dose dependent | sin | 0 | NA |
| 485 | 133.43 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 7 |
| 510 | 133.53 | radiation | 30 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 528 | 133.58 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 537 | 133.61 | radiation | 10 | 14400 | < th | dose dependent | rect. | 18 | 5 |
| 579 | 133.78 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 6 |
| 594 | 133.84 | humidity | 90 | 43200 | < th | dose independent | rect. | 19 | 8 |
| 603 | 133.87 | radiation | 1 | 1440 | < th | dose independent | sin | 14 | NA |
| 613 | 133.92 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 16 |
| 618 | 133.94 | radiation | 1 | 1440 | < th | dose dependent | sin | 14 | NA |
| 628 | 133.99 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 14 |
| 632 | 134.01 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 8 |
| 636 | 134.02 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 17 |
| 647 | 134.05 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 10 |
| 667 | 134.12 | radiation | 1 | 1440 | > th | dose independent | sin | 14 | NA |
| 830 | 134.48 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 15 |
| 855 | 134.53 | wind | 9 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 878 | 134.55 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 12 |
| 883 | 134.57 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 4 |
| 885 | 134.57 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 9 |
| 891 | 134.58 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 901 | 134.60 | humidity | 70 | 14400 | < th | dose independent | rect. | 18 | 14 |
| 907 | 134.60 | temperature | 25 | 1440 | > th | dose dependent | rect. | 21 | 23 |
| 957 | 134.71 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 986 | 134.77 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 987 | 134.77 | humidity | 90 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 989 | 134.77 | humidity | 90 | 43200 | > th | dose independent | rect. | 19 | 11 |
| 996 | 134.79 | humidity | 90 | 43200 | > th | dose independent | rect. | 20 | 7 |