BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0623600 Os07g0623600|AK063642
(288 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G35780.1 | chr1:13277778-13280113 REVERSE LENGTH=287 300 8e-82
AT1G78150.3 | chr1:29404996-29406341 FORWARD LENGTH=304 281 2e-76
AT4G39860.1 | chr4:18499909-18501472 FORWARD LENGTH=300 275 2e-74
AT2G22270.1 | chr2:9463765-9465282 FORWARD LENGTH=329 194 3e-50
>AT1G35780.1 | chr1:13277778-13280113 REVERSE LENGTH=287
Length = 286
Score = 300 bits (767), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 164/294 (55%), Positives = 205/294 (69%), Gaps = 14/294 (4%)
Query: 1 MERPAPVRKSHTSTADLLTWPEGAAQELAAGATPPPNRRPHQPSEAISKVVFGGQVTEEE 60
ME+ PVRK H STADLLTWPE E A + R HQPS+ ISKVVFGGQVT+EE
Sbjct: 1 MEKNTPVRKPHMSTADLLTWPENQPFESPAAVSSRSAARSHQPSDGISKVVFGGQVTDEE 60
Query: 61 FESLNKRKPCSAPKWKEMTGSGIFAAEGEVEEDESANA-SATPVRTVSKNYQAISTISHI 119
ESLNKRKPCS K KE+TGSGIF+ E ++ E A+A SAT ++ + + +SHI
Sbjct: 61 VESLNKRKPCSNYKMKEITGSGIFSVYEENDDSELASANSATNGKSRTFQQPPAAIMSHI 120
Query: 120 SFAEEESVSPKKPTSIAEVAKQRELSGTLQSEDESKMKRQISNAKSKELSGHDIFAPPED 179
SF EEE V+PKKP ++ EVAKQRELSGTL+ + ++K+ +Q S+AK KELSGH+IFAPP +
Sbjct: 121 SFGEEEIVTPKKPATVPEVAKQRELSGTLEYQSDAKLNKQFSDAKCKELSGHNIFAPPPE 180
Query: 180 PRPRNSANGSTSQTPGKNAQVSTITFGEADT--DSVVKTAKKIPEKKLTDLTGNDIFKGD 237
+ R + A GE+DT D +KTAKKI ++K TDL+GN++FK D
Sbjct: 181 IKLRPTVRAL--------AYKDNFDLGESDTKPDGELKTAKKIADRKFTDLSGNNVFKSD 232
Query: 238 A---APGTAEKHLSTAKLKEMTGSDIFADGKAPSRDYLGGIRKPPGGESSIALV 288
+ TAE+ LSTAKLKE++G+DIFAD KA SRDY GG+RKPPGGESSIALV
Sbjct: 233 VSSPSSATAERLLSTAKLKEISGNDIFADAKAQSRDYFGGVRKPPGGESSIALV 286
>AT1G78150.3 | chr1:29404996-29406341 FORWARD LENGTH=304
Length = 303
Score = 281 bits (720), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 162/317 (51%), Positives = 207/317 (65%), Gaps = 43/317 (13%)
Query: 1 MERPAPVRKSHTSTADLLTWPEGAAQELAAGATPPPNRRPHQPSEAISKVVFGGQVTEEE 60
MER PVRK HTSTADLLTW E + + + R HQPS+ ISKVVFGGQVT+EE
Sbjct: 1 MERSTPVRKPHTSTADLLTWSEVPPPD-SPSSASRSAVRSHQPSDGISKVVFGGQVTDEE 59
Query: 61 FESLNKR-----------------------------KPCSAPKWKEMTGSGIFAAEGEVE 91
ESLN+R KPCS K KE+TGSGIF+ E
Sbjct: 60 VESLNRRILDDAFDSFMRLVIYTNVKTCENVYDVIRKPCSEHKMKEITGSGIFSRN---E 116
Query: 92 EDESANASATPVRTVSKNYQAISTISHISFAEEESVSPKKPTSIAEVAKQRELSGTLQSE 151
+D+++ PV QA++ IS ISF EEE++SPKKP ++ EVAKQRELSGT+++E
Sbjct: 117 KDDAS--EPLPVYQ-----QAVNGISQISFGEEENLSPKKPATVPEVAKQRELSGTMENE 169
Query: 152 DESKMKRQISNAKSKELSGHDIFAPPEDPRPRNSANGSTSQTPGKNAQVSTITFGEADTD 211
+K+++Q+S+AK KE+SG +IFAPP + +PR+ N + + N + T A+ D
Sbjct: 170 SANKLQKQLSDAKYKEISGQNIFAPPPEIKPRSGTNRALALKDNFNLGAESQT---AEED 226
Query: 212 SVVKTAKKIPEKKLTDLTGNDIFKGDAAPGTAEKHLSTAKLKEMTGSDIFADGKAPSRDY 271
S VKTAKKI +KK +L+GNDIFKGDAA EKHLS AKLKE+ G++IFADGK +RDY
Sbjct: 227 SSVKTAKKIYDKKFAELSGNDIFKGDAASSNVEKHLSQAKLKEIGGNNIFADGKVEARDY 286
Query: 272 LGGIRKPPGGESSIALV 288
LGG+RKPPGGE+SIALV
Sbjct: 287 LGGVRKPPGGETSIALV 303
>AT4G39860.1 | chr4:18499909-18501472 FORWARD LENGTH=300
Length = 299
Score = 275 bits (703), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 152/307 (49%), Positives = 203/307 (66%), Gaps = 27/307 (8%)
Query: 1 MERPAPVRKSHTSTADLLTWPEGAAQELAAGATPPPNRRPHQPSEAISKVVFGGQVTEEE 60
MER PVR HTSTADLL+W E + + R HQPS+ ISK++ GGQ+T+EE
Sbjct: 1 MERNTPVRNPHTSTADLLSWSETPPPPHHSTPSAA---RSHQPSDGISKILGGGQITDEE 57
Query: 61 FESLNKRKPCSAPKWKEMTGSGIFAAEGEVEEDESANASATPVRTVSKNYQAISTISHIS 120
+SLNK K CS K KEMTGSGIF +G+V + ++A+ P + Q ++ +S IS
Sbjct: 58 AQSLNKLKNCSGYKLKEMTGSGIFTDKGKVGSE--SDATTDPKTGLRYYQQTLNGMSQIS 115
Query: 121 FAEEESVSPKKPTSIAEVAKQRELSGTLQSEDESKMKRQISNAKSKELSGHDIFAPPEDP 180
F+ + +VSPKKPT++ EVAKQRELSG L +E + K +QIS+AK +E+SGHDIFAPP +
Sbjct: 116 FSADGNVSPKKPTTLTEVAKQRELSGNLLTEADLKSNKQISSAKIEEISGHDIFAPPSEI 175
Query: 181 RPRN--------SANGSTSQTPGKNAQVST-----------ITFGEADTDSVVKTAKKIP 221
+PR+ N + +N + S I F E + VVKT+KKI
Sbjct: 176 QPRSLVAAQQEARGNRDMGEPAPRNLRTSVKVSNPAGGQSNILFSE---EPVVKTSKKIH 232
Query: 222 EKKLTDLTGNDIFKGDAAPGTAEKHLSTAKLKEMTGSDIFADGKAPSRDYLGGIRKPPGG 281
+K +LTGN IFKGD +PG+A+K LS+AKL+EM+G++IFADGK+ SRDY GG+RKPPGG
Sbjct: 233 NQKFQELTGNGIFKGDESPGSADKQLSSAKLREMSGNNIFADGKSESRDYFGGVRKPPGG 292
Query: 282 ESSIALV 288
ESSI+LV
Sbjct: 293 ESSISLV 299
>AT2G22270.1 | chr2:9463765-9465282 FORWARD LENGTH=329
Length = 328
Score = 194 bits (494), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 135/330 (40%), Positives = 180/330 (54%), Gaps = 62/330 (18%)
Query: 11 HTSTADLLTWPEGAAQELAAGATPPPNRRPHQPSEAISKVVFGG-QVTEEEFESLN---- 65
H STADLL+W E + + A R +QPS+ ++ V+ GG Q+T E +SLN
Sbjct: 9 HHSTADLLSWSEIRRPDYSTAAN-----RSNQPSDGMNDVLGGGGQITNAETKSLNTNVS 63
Query: 66 KRKPCSAPKWKEMTGSGIFAAEGEVEEDESA------------------------NASAT 101
RK CS K KEMTGS IF+ +G+ + + N
Sbjct: 64 HRKNCSGHKLKEMTGSDIFSDDGKYDPNHQTRIHYHQDQLSQISFSGEENATTPMNGKDD 123
Query: 102 PVRTVSKNYQAISTISHISFAEEESVSPKKPTSIAEVAKQRELSGTLQSEDESKMKR-QI 160
P +Y S ISF+ EE+V+PKKPT++ E AKQ+ELS T++++ +SK K+ QI
Sbjct: 124 PNHQTRIHYHQ-DQRSQISFSGEENVTPKKPTTLNEAAKQKELSRTVETQADSKCKKKQI 182
Query: 161 SNAKSKELSGHDIFAPPEDPRPRNSANGST-SQTPGK------------------NAQVS 201
SN K+K +SGHDIFA PE +PR G+T S+ G N Q S
Sbjct: 183 SNTKNKAMSGHDIFASPE-SQPRRLFGGATQSEVKGNKNTEESAPRSSRASVKTSNGQSS 241
Query: 202 TITFGEADTDSVVKTAKKIPEKK--LTDLTGNDIFKGDAAP-GTAEKHLSTAKLKEMTGS 258
F E + VVK++KKI +K LT N IFK D P G +EK S+AK +EM+G
Sbjct: 242 NRLFSE---EHVVKSSKKIHNQKSQFQGLTSNGIFKSDKIPPGYSEKMQSSAKKREMSGH 298
Query: 259 DIFADGKAPSRDYLGGIRKPPGGESSIALV 288
+IFADGK+ RDY GG R+PPGGESSI+LV
Sbjct: 299 NIFADGKSEYRDYYGGARRPPGGESSISLV 328
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.305 0.123 0.340
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,660,974
Number of extensions: 286382
Number of successful extensions: 735
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 699
Number of HSP's successfully gapped: 4
Length of query: 288
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 190
Effective length of database: 8,419,801
Effective search space: 1599762190
Effective search space used: 1599762190
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 111 (47.4 bits)