BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0615200 Os07g0615200|AK065604
(244 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0615200 ZIM domain containing protein 456 e-129
Os03g0402800 ZIM domain containing protein 262 1e-70
Os09g0439200 ZIM domain containing protein 107 8e-24
Os03g0180900 ZIM domain containing protein 92 3e-19
Os03g0181100 ZIM domain containing protein 80 1e-15
>Os07g0615200 ZIM domain containing protein
Length = 244
Score = 456 bits (1174), Expect = e-129, Method: Compositional matrix adjust.
Identities = 230/244 (94%), Positives = 230/244 (94%)
Query: 1 MAASARPVGVGGERATSFAMACSLLSRYVRQNGAAAAELGLGIRGEGEAPRAAPATMSLL 60
MAASARPVGVGGERATSFAMACSLLSRYVRQNGAAAAELGLGIRGEGEAPRAAPATMSLL
Sbjct: 1 MAASARPVGVGGERATSFAMACSLLSRYVRQNGAAAAELGLGIRGEGEAPRAAPATMSLL 60
Query: 61 PGEAERKKETMELFPQSAGFGQQDAITADSAADAREQEPEKRQLTIFYGGKVLVFNDFPA 120
PGEAERKKETMELFPQSAGFGQQDAITADSAADAREQEPEKRQLTIFYGGKVLVFNDFPA
Sbjct: 61 PGEAERKKETMELFPQSAGFGQQDAITADSAADAREQEPEKRQLTIFYGGKVLVFNDFPA 120
Query: 121 DKAKGLMQLASKGSXXXXXXXXXXXXXXVTDNTKAPMAVPAPVSSLPTAQADAQKPARAN 180
DKAKGLMQLASKGS VTDNTKAPMAVPAPVSSLPTAQADAQKPARAN
Sbjct: 121 DKAKGLMQLASKGSPVAPQNAAAPAPAAVTDNTKAPMAVPAPVSSLPTAQADAQKPARAN 180
Query: 181 ASDMPIARKASLHRFLEKRKDRLNAKTPYQASPSDATPVKKEPESQPWLGLGPNAVVKPI 240
ASDMPIARKASLHRFLEKRKDRLNAKTPYQASPSDATPVKKEPESQPWLGLGPNAVVKPI
Sbjct: 181 ASDMPIARKASLHRFLEKRKDRLNAKTPYQASPSDATPVKKEPESQPWLGLGPNAVVKPI 240
Query: 241 ERGQ 244
ERGQ
Sbjct: 241 ERGQ 244
>Os03g0402800 ZIM domain containing protein
Length = 228
Score = 262 bits (670), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 147/226 (65%), Positives = 164/226 (72%), Gaps = 23/226 (10%)
Query: 12 GER-ATSFAMACSLLSRYVRQNGAAAAELGLGIRGEGEAPRAAPATMSLLPGEAERKKET 70
GER ++SFAMACSLLSRYVRQNGAAA ELGLGIRGE +A + KET
Sbjct: 7 GERGSSSFAMACSLLSRYVRQNGAAAGELGLGIRGEADA---------------NKGKET 51
Query: 71 MELFPQSAGFGQQDAITADSAADAREQEPEKRQLTIFYGGKVLVFNDFPADKAKGLMQLA 130
MELFPQ++GFG + A ++ DAREQE KRQLTIFYGGKVLVF+DFPA+KAK LMQ+A
Sbjct: 52 MELFPQNSGFGSEAAAVKETP-DAREQE--KRQLTIFYGGKVLVFDDFPAEKAKDLMQMA 108
Query: 131 SKGSXXXXXXXX--XXXXXXVTDNTKAPMAVPAPVSSLPTAQADAQKPARANASDMPIAR 188
SK S V DNTK AVPAP S+LP AQA+A KP R NA+D+P AR
Sbjct: 109 SKSSSTAQNCVLLPSSATATVADNTKV-SAVPAPASALPVAQANAPKPVRPNAADLPQAR 167
Query: 189 KASLHRFLEKRKDRLNAKTPYQASPSDATPVKKE-PESQPWLGLGP 233
KASLHRFLEKRKDRL AK PYQ SPSDA+PVKKE ESQPWLGLGP
Sbjct: 168 KASLHRFLEKRKDRLQAKAPYQGSPSDASPVKKELQESQPWLGLGP 213
>Os09g0439200 ZIM domain containing protein
Length = 232
Score = 107 bits (267), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 89/250 (35%), Positives = 117/250 (46%), Gaps = 56/250 (22%)
Query: 12 GERATSFAMACSLLSRYVRQNGAAAAELGLGIRGEGEAP------------RAAPATMSL 59
G+ +SFA+ CSLLS+++++ L G AP R P TM+L
Sbjct: 13 GKDRSSFAVTCSLLSQFLKEKKGGGGGLQGLGLGLRPAPAAPPAAGAGGAFRPPPTTMNL 72
Query: 60 L-----------PGEAERKKETMELFPQSAGFGQQDAITADSAADAREQEPEKRQLTIFY 108
L P AE + + L A QQ +A AA + Q QLTIFY
Sbjct: 73 LSGLDAPAVEVEPNTAETAADELPLIKAPAD--QQSDESASEAAGEKAQ-----QLTIFY 125
Query: 109 GGKVLVFNDFPADKAKGLMQLASKGSXXXXXXXXXXXXXXVTDNTKAPMAVPAPVSSLPT 168
GGKV+VF +FP+ K K L+Q+ S G V NT A SLP
Sbjct: 126 GGKVVVFENFPSTKVKDLLQIVSTGDG-------------VDKNTGT-----AATQSLP- 166
Query: 169 AQADAQKPARANASDMPIARKASLHRFLEKRKDRLNAKTPYQASPSDATPVKKEPESQPW 228
+PA + D+PIAR+ SLHRFLEKRK R+NA PYQA+ + A P K+ + W
Sbjct: 167 ------RPAHNSLPDLPIARRNSLHRFLEKRKGRMNANAPYQANCT-AAPSKQANGDKSW 219
Query: 229 LGLGPNAVVK 238
LG G +K
Sbjct: 220 LGFGQEMTIK 229
>Os03g0180900 ZIM domain containing protein
Length = 209
Score = 92.0 bits (227), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 104/227 (45%), Gaps = 55/227 (24%)
Query: 18 FAMACSLLSRYVRQNGAAAAELGLGIRGEGEAPRAAPATMSLLPGEAERKKE------TM 71
FA+ C LL +Y++++ + G G P A MSL+ G A+ ++E TM
Sbjct: 25 FAVTCGLLRQYMKEHSGSNG-------GGGFLP--AVTAMSLMTGGADAEEEAPEVRKTM 75
Query: 72 ELFPQSAGFGQQDAITADSAADAREQEPEKRQLTIFYGGKVLVFNDFPADKAKGLMQLAS 131
ELFPQ AG D+ R++ EK QLTIFYGG V+VF+DFPA+KA LM+LA
Sbjct: 76 ELFPQQAG------TLKDT--QERKEITEKAQLTIFYGGSVVVFDDFPAEKAGELMKLA- 126
Query: 132 KGSXXXXXXXXXXXXXXVTDNTKAPMAVPAPVSSLPTAQADAQKPARANASDMPIARKAS 191
GS D+T A + DMPIARK S
Sbjct: 127 -GSR---------------DSTAA-----------AAVSDAGAAAGQPCLPDMPIARKVS 159
Query: 192 LHRFLEKRKDRLNAKTPYQASP----SDATPVKKEPESQPWLGLGPN 234
L RFLEKRK+R+ P S + KK+ WL + P
Sbjct: 160 LQRFLEKRKNRIVVAEPLPESEKKEAESSKRAKKDDGGASWLQVNPT 206
>Os03g0181100 ZIM domain containing protein
Length = 187
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 62/123 (50%), Gaps = 36/123 (29%)
Query: 104 LTIFYGGKVLVFNDFPADKAKGLMQLASKGSXXXXXXXXXXXXXXVTDNTKAPMAVPAPV 163
LTIFYGG+++VF DFPADKA +M++AS G
Sbjct: 75 LTIFYGGRMVVFEDFPADKAAEVMRMASSG------------------------------ 104
Query: 164 SSLPTAQADAQKPARANASDMPIARKASLHRFLEKRKDRLNAKTPYQASPSDATPVKKEP 223
A A AQ+ A A DMPI RKASL RF KRKDRL A TPY A PS A EP
Sbjct: 105 ----MAAAPAQREGAALA-DMPIMRKASLQRFFAKRKDRLAATTPY-ARPSPAETKASEP 158
Query: 224 ESQ 226
E +
Sbjct: 159 EEK 161
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.311 0.127 0.356
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,083,007
Number of extensions: 334735
Number of successful extensions: 1174
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1165
Number of HSP's successfully gapped: 6
Length of query: 244
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 146
Effective length of database: 11,918,829
Effective search space: 1740149034
Effective search space used: 1740149034
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 154 (63.9 bits)