BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0604600 Os07g0604600|AK062832
         (127 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0604600  B12D family protein                                 266   3e-72
Os07g0604700  B12D family protein                                 174   1e-44
Os06g0246000  Similar to HvB12D protein (B12Dg1 protein)          103   3e-23
Os03g0601500  B12D family protein                                  96   7e-21
Os07g0274400  B12D family protein                                  89   1e-18
Os07g0274700  B12D family protein                                  88   1e-18

>Os07g0604600 B12D family protein
          Length = 127

 Score =  266 bits (680), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 127/127 (100%), Positives = 127/127 (100%)

Query: 1   CSEQEQGQEQASRSRSVSVSGLASTATAASIDMGRWLKPDVYPLIAAMTFVTGLCTFQLT 60
           CSEQEQGQEQASRSRSVSVSGLASTATAASIDMGRWLKPDVYPLIAAMTFVTGLCTFQLT
Sbjct: 1   CSEQEQGQEQASRSRSVSVSGLASTATAASIDMGRWLKPDVYPLIAAMTFVTGLCTFQLT 60

Query: 61  RNVFMNPDVRVNKNNRKSAVLENAEEGEKYHQHAFRRFLATQRPEVFPALNRFFAGPATV 120
           RNVFMNPDVRVNKNNRKSAVLENAEEGEKYHQHAFRRFLATQRPEVFPALNRFFAGPATV
Sbjct: 61  RNVFMNPDVRVNKNNRKSAVLENAEEGEKYHQHAFRRFLATQRPEVFPALNRFFAGPATV 120

Query: 121 ARSDRHD 127
           ARSDRHD
Sbjct: 121 ARSDRHD 127



>Os07g0604700 B12D family protein
          Length = 95

 Score =  174 bits (441), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 77/95 (81%), Positives = 87/95 (91%)

Query: 33  MGRWLKPDVYPLIAAMTFVTGLCTFQLTRNVFMNPDVRVNKNNRKSAVLENAEEGEKYHQ 92
           MGRW+KPDVYPLI AM+ V G+C FQLTRNVFMNPDVRVNK++R+SAVLENA+EGEKYH 
Sbjct: 1   MGRWVKPDVYPLIVAMSLVGGMCVFQLTRNVFMNPDVRVNKSHRQSAVLENADEGEKYHH 60

Query: 93  HAFRRFLATQRPEVFPALNRFFAGPATVARSDRHD 127
           HAFRRFL TQRPEVFPA+NRFFAGPATV +SDR +
Sbjct: 61  HAFRRFLGTQRPEVFPAINRFFAGPATVPKSDRQN 95



>Os06g0246000 Similar to HvB12D protein (B12Dg1 protein)
          Length = 89

 Score =  103 bits (257), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 43/83 (51%), Positives = 58/83 (69%)

Query: 35  RWLKPDVYPLIAAMTFVTGLCTFQLTRNVFMNPDVRVNKNNRKSAVLENAEEGEKYHQHA 94
           RW++P+VYPL AAM    G+C FQL RN+  NP+VRVNK  R + VLEN EEG +Y +H 
Sbjct: 5   RWVRPEVYPLFAAMGVAVGICGFQLFRNITGNPEVRVNKVGRAAGVLENHEEGRRYAEHG 64

Query: 95  FRRFLATQRPEVFPALNRFFAGP 117
            R ++  + PE+ PA+N+FF  P
Sbjct: 65  LRNYVRDKTPEIMPAINKFFTEP 87



>Os03g0601500 B12D family protein
          Length = 96

 Score = 95.9 bits (237), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 45/84 (53%), Positives = 64/84 (76%)

Query: 33  MGRWLKPDVYPLIAAMTFVTGLCTFQLTRNVFMNPDVRVNKNNRKSAVLENAEEGEKYHQ 92
           MGRW++P+VYPL+AAM   +G+  FQL RNV  NP+V+++K NR++AV ++A E E+Y  
Sbjct: 1   MGRWVRPEVYPLMAAMMLASGMVVFQLGRNVCTNPEVKISKRNRRNAVPDSAAEAERYSM 60

Query: 93  HAFRRFLATQRPEVFPALNRFFAG 116
           H FRRF   +RPEV P++NRFF+ 
Sbjct: 61  HGFRRFFGRRRPEVMPSINRFFSN 84



>Os07g0274400 B12D family protein
          Length = 89

 Score = 88.6 bits (218), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 37/77 (48%), Positives = 51/77 (66%)

Query: 35  RWLKPDVYPLIAAMTFVTGLCTFQLTRNVFMNPDVRVNKNNRKSAVLENAEEGEKYHQHA 94
           RW++P+VYPL A      G+C  QL RN+  NP+VRV K NR + VLEN +EG++Y QH 
Sbjct: 4   RWIRPEVYPLFATTGVAVGICAMQLVRNITTNPEVRVTKENRAAGVLENFDEGKRYSQHG 63

Query: 95  FRRFLATQRPEVFPALN 111
            RRF  ++R +   AL+
Sbjct: 64  VRRFWLSKRRDYMQALD 80



>Os07g0274700 B12D family protein
          Length = 130

 Score = 88.2 bits (217), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 37/78 (47%), Positives = 51/78 (65%)

Query: 40  DVYPLIAAMTFVTGLCTFQLTRNVFMNPDVRVNKNNRKSAVLENAEEGEKYHQHAFRRFL 99
           +VYPL  A      +C  QL RN+  NP+VRV K  R + VLEN +EG++Y QH FR+F+
Sbjct: 50  EVYPLFLATGVAVSICVGQLVRNITGNPEVRVLKEKRAAGVLENFDEGKRYSQHGFRKFI 109

Query: 100 ATQRPEVFPALNRFFAGP 117
             +RPE+ P +N FF+ P
Sbjct: 110 DGKRPEIMPGINSFFSDP 127



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.129    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,704,345
Number of extensions: 116361
Number of successful extensions: 381
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 381
Number of HSP's successfully gapped: 6
Length of query: 127
Length of database: 17,035,801
Length adjustment: 89
Effective length of query: 38
Effective length of database: 12,388,755
Effective search space: 470772690
Effective search space used: 470772690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 150 (62.4 bits)