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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0274400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : B12D family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.79 (0.0177) R2 : 0.00776
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0704 (0.0373) R2dN8 : 0.01 R2N8 : 0.00776
σ : 0.334
deviance : 51.05
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
49.8 0.332 2.8 0.00103 0.169 0.187 -0.261 -0.145 0.054 1.95 2.35 75 -- --
49.84 0.329 2.8 0.00541 0.173 0.19 -0.102 -- 0.0534 1.93 2.5 74 -- --
49.88 0.329 2.8 0.00968 0.164 0.183 -- 0.0336 0.0568 1.86 2.35 75 -- --
49.88 0.329 2.8 0.00897 0.173 0.191 -- -- 0.0556 1.88 2.42 75 -- --
50.44 0.331 2.79 0.0232 -- 0.0753 -- 0.0452 0.0802 -- 4.82 49 -- --
50.56 0.333 2.79 0.0121 0.0915 -- -0.0567 -- 0.071 8.92 -- -- -- --
50.57 0.333 2.79 0.0104 0.0912 -- -- -- 0.0711 9.2 -- -- -- --
50.38 0.331 2.79 0.00751 -- 0.0816 -- -- 0.0637 -- 4.847 44 -- --
49.88 0.329 2.8 -- 0.176 0.192 -- -- 0.054 1.86 2.412 75 -- --
51.05 0.334 2.79 0.0101 -- -- -- -- 0.0716 -- -- -- -- --
50.57 0.333 2.79 -- 0.0912 -- -- -- 0.0699 9.19 -- -- -- --
50.39 0.331 2.79 -- -- 0.0797 -- -- 0.0627 -- 4.846 44 -- --
51.05 0.334 2.79 -- -- -- -- -- 0.0704 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 46.60 humidity 90.0 10 < th dose dependent rect. 3 4
5 47.05 humidity 90.0 30 < th dose independent rect. 2 5
7 47.11 humidity 80.0 90 < th dose independent rect. 2 2
8 47.11 humidity 80.0 90 < th dose dependent rect. 2 2
11 47.12 humidity 90.0 10 < th dose dependent rect. 3 1
16 47.33 humidity 80.0 10 < th dose independent rect. 3 1
47 47.62 humidity 90.0 30 < th dose dependent rect. 6 1
48 47.64 wind 1.0 30 > th dose dependent rect. 6 1
49 47.64 wind 7.0 10 > th dose dependent rect. 15 1
51 47.65 temperature 25.0 30 > th dose independent rect. 6 1
52 47.65 wind 9.0 30 < th dose independent rect. 7 23
54 47.65 temperature 20.0 30 > th dose dependent rect. 6 1
59 47.67 atmosphere 1015.0 30 < th dose dependent rect. 6 1
60 47.67 radiation 1.0 10 > th dose dependent rect. 6 1
62 47.68 radiation 20.0 30 < th dose dependent rect. 6 1
67 47.72 wind 9.0 1440 < th dose independent rect. 7 1
68 47.72 temperature 10.0 1440 > th dose independent rect. 7 1
72 47.72 temperature 30.0 1440 < th dose independent rect. 7 1
76 47.72 humidity 50.0 1440 > th dose independent rect. 7 1
81 47.72 humidity 90.0 30 < th dose independent rect. 6 1
82 47.72 atmosphere 995.0 1440 > th dose independent rect. 7 1
83 47.72 atmosphere 1015.0 1440 < th dose independent rect. 7 1
84 47.72 temperature 10.0 1440 > th dose independent rect. 8 23
90 47.73 atmosphere 1005.0 30 > th dose independent rect. 6 1
93 47.74 wind 1.0 30 > th dose independent rect. 6 1
94 47.74 humidity 80.0 30 > th dose independent rect. 6 1
96 47.74 radiation 1.0 30 > th dose independent rect. 6 1
98 47.75 wind 5.0 30 < th dose independent rect. 6 1
102 47.75 temperature 10.0 30 > th dose independent rect. 6 1
104 47.75 temperature 30.0 30 < th dose independent rect. 6 1
105 47.75 humidity 50.0 30 > th dose independent rect. 6 1
109 47.75 atmosphere 1015.0 30 < th dose independent rect. 6 1
110 47.75 radiation 20.0 30 < th dose independent rect. 6 1
113 47.75 precipitation 0.1 30 < th dose independent rect. 6 1
114 47.75 temperature 10.0 30 > th dose independent rect. 7 23
117 47.75 precipitation 0.1 30 < th dose dependent rect. 6 1
120 47.78 wind 7.0 10 > th dose independent rect. 15 1
122 47.78 temperature 30.0 10 < th dose independent rect. 7 23
124 47.78 humidity 50.0 30 > th dose dependent rect. 6 1
128 47.79 wind 9.0 30 < th dose dependent rect. 6 1
154 47.82 atmosphere 995.0 30 > th dose dependent rect. 6 1
173 47.88 radiation 40.0 1440 < th dose independent rect. 7 1
190 47.98 temperature 30.0 30 < th dose dependent rect. 6 1
195 48.02 precipitation 0.1 30 < th dose independent rect. 7 23
196 48.02 precipitation 0.1 30 < th dose dependent rect. 7 23
203 48.06 temperature 25.0 30 > th dose dependent rect. 4 3
204 48.07 atmosphere 995.0 30 > th dose independent rect. 7 23
226 48.23 wind 7.0 30 > th dose dependent rect. 12 4
230 48.26 wind 3.0 10 > th dose dependent rect. 3 1
249 48.38 atmosphere 1005.0 270 > th dose dependent rect. 3 1
265 48.44 humidity 50.0 30 > th dose independent rect. 7 23
273 48.47 atmosphere 1005.0 30 > th dose dependent rect. 3 4
280 48.50 temperature 25.0 30 > th dose independent rect. 1 6
329 48.58 temperature 10.0 1440 > th dose independent rect. 13 1
333 48.58 atmosphere 995.0 1440 > th dose independent rect. 13 1
336 48.58 temperature 10.0 1440 > th dose independent rect. 14 23
342 48.58 humidity 80.0 270 < th dose dependent rect. 24 4
346 48.60 atmosphere 1015.0 30 < th dose independent rect. 7 23
348 48.60 temperature 25.0 30 > th dose dependent rect. 12 1
389 48.68 temperature 20.0 90 < th dose dependent rect. 2 1
413 48.76 temperature 25.0 30 > th dose independent rect. 12 1
424 48.78 radiation 30.0 30 > th dose independent rect. 15 1
441 48.78 radiation 1.0 90 > th dose independent rect. 11 20
449 48.80 radiation 40.0 30 > th dose independent rect. 12 1
458 48.81 humidity 90.0 30 < th dose independent rect. 12 19
466 48.83 humidity 80.0 30 < th dose independent rect. 12 1
475 48.85 wind 3.0 30 > th dose independent rect. 12 1
485 48.86 wind 7.0 30 < th dose independent rect. 12 1
490 48.87 humidity 60.0 30 > th dose independent rect. 12 1
493 48.87 radiation 1.0 30 > th dose dependent rect. 12 1
508 48.89 atmosphere 1005.0 30 > th dose independent rect. 12 1
509 48.89 atmosphere 1010.0 30 < th dose independent rect. 12 1
510 48.89 radiation 20.0 30 > th dose independent rect. 12 1
520 48.90 temperature 10.0 30 > th dose independent rect. 12 1
523 48.90 atmosphere 995.0 30 > th dose independent rect. 12 1
525 48.90 radiation 1.0 30 > th dose independent rect. 12 1
527 48.90 precipitation 0.1 30 < th dose independent rect. 12 1
530 48.90 temperature 10.0 30 > th dose independent rect. 13 23
532 48.90 atmosphere 995.0 30 > th dose dependent rect. 12 1
533 48.90 precipitation 0.1 30 < th dose dependent rect. 12 1
534 48.90 wind 1.0 10 < th dose dependent rect. 11 3
571 48.92 wind 1.0 30 < th dose independent rect. 10 5
599 48.93 wind 9.0 30 < th dose dependent rect. 7 23
602 48.94 wind 1.0 30 > th dose dependent rect. 12 1
604 48.94 wind 9.0 30 < th dose dependent rect. 12 1
633 48.97 humidity 90.0 30 < th dose dependent rect. 12 1
642 48.98 wind 1.0 10 < th dose independent rect. 13 1
655 48.98 wind 1.0 10 < th dose dependent rect. 13 1
679 48.99 wind 1.0 90 < th dose independent rect. 12 1
750 49.01 humidity 50.0 30 > th dose dependent rect. 12 1
751 49.01 atmosphere 1015.0 30 < th dose dependent rect. 12 1
766 49.02 wind 7.0 270 > th dose independent rect. 12 4
840 49.05 wind 1.0 90 > th dose independent rect. 7 14
885 49.07 radiation 30.0 30 > th dose dependent rect. 15 1
967 49.09 temperature 25.0 720 > th dose independent rect. 5 1
998 49.10 humidity 70.0 720 > th dose independent rect. 19 12