BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0274400 Os07g0274400|AK100692
         (89 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G48140.1  | chr3:17778471-17779299 FORWARD LENGTH=89           112   3e-26
AT3G29970.1  | chr3:11745299-11746481 FORWARD LENGTH=88            81   1e-16

>AT3G48140.1 | chr3:17778471-17779299 FORWARD LENGTH=89
          Length = 88

 Score =  112 bits (281), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 51/80 (63%), Positives = 65/80 (81%)

Query: 1  MASRWIRPEVYPLFATTGVAVGICAMQLVRNITTNPEVRVTKENRAAGVLENFDEGKRYS 60
          MASRW+RPEVYPLFA TGVAVGICA  L+RNIT NPEVR TKENRAAG+L+N  EG++Y 
Sbjct: 1  MASRWLRPEVYPLFAATGVAVGICAFSLIRNITGNPEVRCTKENRAAGILDNHAEGEKYK 60

Query: 61 QHGVRRFWLSKRRDYMQALD 80
          ++ +R+F  +K+ + M  L+
Sbjct: 61 ENFLRKFVRNKKPEIMPGLN 80



>AT3G29970.1 | chr3:11745299-11746481 FORWARD LENGTH=88
          Length = 87

 Score = 80.9 bits (198), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 33/78 (42%), Positives = 49/78 (62%)

Query: 3  SRWIRPEVYPLFATTGVAVGICAMQLVRNITTNPEVRVTKENRAAGVLENFDEGKRYSQH 62
           RW+RPEVYPL    G    +   QL RN   NP+ R+ KE+R  G+LEN DEG++Y+QH
Sbjct: 2  GRWVRPEVYPLLGAMGFVTSMVVFQLTRNAFLNPDCRINKEHRKMGILENKDEGEKYAQH 61

Query: 63 GVRRFWLSKRRDYMQALD 80
            R++  +++   M +L+
Sbjct: 62 NFRKYLRTRQPQVMPSLN 79



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.132    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,937,828
Number of extensions: 60254
Number of successful extensions: 117
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 2
Length of query: 89
Length of database: 11,106,569
Length adjustment: 60
Effective length of query: 29
Effective length of database: 9,461,609
Effective search space: 274386661
Effective search space used: 274386661
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 104 (44.7 bits)