Os07g0274700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : B12D family protein.
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Os07g0274700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : B12D family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 88.57 | 0.442 | 10.7 | -0.133 | 1.34 | -1.38 | 0.322 | -1.52 | 0.15 | 9.86 | 21.03 | 4177 | -- | -- |
| 90.43 | 0.443 | 10.6 | 0.0569 | 1.31 | -1.05 | 0.394 | -- | 0.256 | 9.81 | 22.1 | 3939 | -- | -- |
| 88.33 | 0.438 | 10.7 | -0.203 | 1.31 | -1.28 | -- | -1.44 | 0.154 | 9.83 | 21.5 | 3951 | -- | -- |
| 90.6 | 0.443 | 10.6 | -0.0418 | 1.34 | -0.978 | -- | -- | 0.191 | 9.84 | 22.1 | 2824 | -- | -- |
| 185.54 | 0.634 | 10.7 | -0.486 | -- | -1.17 | -- | -1.4 | 0.134 | -- | 22.08 | 2325 | -- | -- |
| 122.18 | 0.518 | 10.7 | -0.529 | 1.36 | -- | 0.367 | -- | -0.143 | 9.99 | -- | -- | -- | -- |
| 122.7 | 0.519 | 10.7 | -0.515 | 1.36 | -- | -- | -- | -0.142 | 10 | -- | -- | -- | -- |
| 171.87 | 0.611 | 10.6 | -0.033 | -- | -1.39 | -- | -- | 0.277 | -- | 25.21 | 2175 | -- | -- |
| 90.59 | 0.443 | 10.6 | -- | 1.34 | -1.02 | -- | -- | 0.212 | 9.87 | 22 | 2830 | -- | -- |
| 233.62 | 0.714 | 10.7 | -0.531 | -- | -- | -- | -- | -0.143 | -- | -- | -- | -- | -- |
| 129.69 | 0.533 | 10.7 | -- | 1.36 | -- | -- | -- | -0.0846 | 10 | -- | -- | -- | -- |
| 149.36 | 0.569 | 10.6 | -- | -- | -1.32 | -- | -- | 0.433 | -- | 25.6 | 765 | -- | -- |
| 241.07 | 0.725 | 10.7 | -- | -- | -- | -- | -- | -0.0838 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 86.07 | temperature | 20 | 4320 | > th | dose independent | rect. | 3 | 1 |
| 2 | 86.07 | temperature | 20 | 4320 | < th | dose independent | rect. | 3 | 1 |
| 13 | 86.97 | wind | 1 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 14 | 86.98 | temperature | 25 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 15 | 87.05 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 5 |
| 16 | 87.06 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 5 |
| 25 | 87.14 | temperature | 15 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 100 | 87.65 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 7 |
| 123 | 87.76 | temperature | 15 | 1440 | > th | dose dependent | rect. | 22 | 10 |
| 128 | 87.78 | temperature | 25 | 1440 | < th | dose dependent | sin | 7 | NA |
| 135 | 87.81 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 7 |
| 243 | 88.17 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 11 |
| 253 | 88.21 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 11 |
| 365 | 88.52 | temperature | 15 | 1440 | > th | dose dependent | sin | 10 | NA |
| 511 | 88.84 | temperature | 20 | 4320 | > th | dose independent | sin | 10 | NA |
| 521 | 88.86 | temperature | 20 | 4320 | < th | dose independent | sin | 11 | NA |
| 601 | 89.02 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 871 | 89.50 | temperature | 25 | 4320 | < th | dose dependent | rect. | 22 | 1 |