BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0274700 Os07g0274700|J065194O15
         (130 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G48140.1  | chr3:17778471-17779299 FORWARD LENGTH=89           113   3e-26
AT3G29970.1  | chr3:11745299-11746481 FORWARD LENGTH=88            89   9e-19

>AT3G48140.1 | chr3:17778471-17779299 FORWARD LENGTH=89
          Length = 88

 Score =  113 bits (282), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 51/78 (65%), Positives = 62/78 (79%)

Query: 50  EVYPLFLATGVAVSICVGQLVRNITGNPEVRVLKEKRAAGVLENFDEGKRYSQHGFRKFI 109
           EVYPLF ATGVAV IC   L+RNITGNPEVR  KE RAAG+L+N  EG++Y ++  RKF+
Sbjct: 9   EVYPLFAATGVAVGICAFSLIRNITGNPEVRCTKENRAAGILDNHAEGEKYKENFLRKFV 68

Query: 110 DGKRPEIMPGINSFFSDP 127
             K+PEIMPG+N FF+DP
Sbjct: 69  RNKKPEIMPGLNKFFTDP 86



>AT3G29970.1 | chr3:11745299-11746481 FORWARD LENGTH=88
          Length = 87

 Score = 88.6 bits (218), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 39/77 (50%), Positives = 53/77 (68%)

Query: 50  EVYPLFLATGVAVSICVGQLVRNITGNPEVRVLKEKRAAGVLENFDEGKRYSQHGFRKFI 109
           EVYPL  A G   S+ V QL RN   NP+ R+ KE R  G+LEN DEG++Y+QH FRK++
Sbjct: 8   EVYPLLGAMGFVTSMVVFQLTRNAFLNPDCRINKEHRKMGILENKDEGEKYAQHNFRKYL 67

Query: 110 DGKRPEIMPGINSFFSD 126
             ++P++MP +N FFS 
Sbjct: 68  RTRQPQVMPSLNRFFSQ 84



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.137    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,576,082
Number of extensions: 85412
Number of successful extensions: 131
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 2
Length of query: 130
Length of database: 11,106,569
Length adjustment: 87
Effective length of query: 43
Effective length of database: 8,721,377
Effective search space: 375019211
Effective search space used: 375019211
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 106 (45.4 bits)