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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0604600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : B12D family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.44 (0.0406) R2 : 0.131
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.54 (0.199) R2dE : 0.132 R2E : 0.131
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0081 (0.0896) R2dN8 : -2.75e-05 R2N8 : -0.00107
σ : 0.753
deviance : 261.1
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 2.019
memory length : 2840
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
254.57 0.75 3.49 -0.157 0.324 1.69 -0.683 2.31 -0.073 9.72 1.126 4378 -- --
254.65 0.743 3.48 0.187 0.345 1.75 -0.791 -- -0.0358 9.66 1.722 2947 -- --
255.54 0.745 3.47 -0.145 0.449 1.8 -- 2.39 -0.0313 10.2 1.081 4428 -- --
254.77 0.743 3.42 0.187 0.504 1.98 -- -- 0.0751 11.3 2.031 2995 -- --
261.77 0.754 3.5 -0.2 -- 1.86 -- 2.68 -0.0953 -- 0.7521 8499 -- --
289.15 0.797 3.5 -0.147 0.228 -- -0.882 -- -0.262 8.91 -- -- -- --
291.74 0.8 3.5 -0.176 0.23 -- -- -- -0.261 9.47 -- -- -- --
260.89 0.752 3.43 0.259 -- 1.69 -- -- 0.0552 -- 1.752 2853 -- --
255.12 0.744 3.43 -- 0.566 1.92 -- -- 0.0142 11.8 1.947 3031 -- --
294.84 0.802 3.5 -0.177 -- -- -- -- -0.26 -- -- -- -- --
292.56 0.8 3.49 -- 0.23 -- -- -- -0.242 9.52 -- -- -- --
261.1 0.753 3.44 -- -- 1.54 -- -- 0.0081 -- 2.019 2840 -- --
295.67 0.803 3.5 -- -- -- -- -- -0.241 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 251.17 radiation 1.0 4320 > th dose independent rect. 14 2
2 251.30 radiation 1.0 4320 < th dose independent rect. 14 2
3 251.68 radiation 1.0 4320 < th dose independent rect. 11 19
8 251.91 radiation 1.0 4320 > th dose independent rect. 11 19
16 252.23 radiation 1.0 4320 > th dose independent rect. 11 7
21 252.35 radiation 1.0 4320 < th dose independent rect. 11 7
25 252.44 radiation 1.0 4320 < th dose independent rect. 11 14
26 252.44 radiation 1.0 4320 < th dose independent rect. 11 16
27 252.45 radiation 1.0 4320 < th dose independent rect. 11 11
165 253.06 radiation 1.0 4320 < th dose independent sin 17 NA
189 253.13 radiation 1.0 4320 > th dose independent sin 17 NA
203 253.50 radiation 1.0 4320 < th dose dependent rect. 11 19
246 253.98 temperature 25.0 4320 < th dose independent rect. 16 1
259 254.22 wind 7.0 43200 > th dose independent rect. 24 1
262 254.36 radiation 1.0 4320 > th dose independent rect. 17 1
263 254.40 radiation 1.0 4320 < th dose independent rect. 17 1
264 254.41 radiation 1.0 4320 < th dose dependent rect. 12 7
279 254.50 radiation 1.0 14400 < th dose dependent rect. 6 1
283 254.53 temperature 20.0 720 > th dose dependent rect. 21 3
304 254.63 temperature 25.0 4320 > th dose independent rect. 16 1
316 254.70 wind 7.0 43200 < th dose independent rect. 24 1
346 255.00 radiation 1.0 4320 < th dose dependent sin 17 NA
349 255.02 radiation 1.0 14400 > th dose independent rect. 6 11
354 255.05 radiation 1.0 14400 < th dose dependent rect. 4 13
355 255.05 radiation 1.0 14400 < th dose dependent rect. 2 15
368 255.13 humidity 90.0 43200 < th dose independent rect. 22 2
369 255.13 radiation 1.0 14400 < th dose independent rect. 6 11
373 255.16 radiation 1.0 14400 < th dose dependent rect. 6 12
379 255.28 radiation 10.0 4320 < th dose independent rect. 6 2
381 255.29 radiation 1.0 4320 < th dose independent rect. 17 5
382 255.29 radiation 1.0 4320 < th dose independent rect. 17 8
383 255.29 radiation 1.0 4320 < th dose independent rect. 17 10
389 255.32 radiation 1.0 4320 < th dose independent rect. 17 3
394 255.33 radiation 1.0 14400 < th dose dependent rect. 21 20
407 255.47 radiation 1.0 4320 < th dose dependent rect. 15 1
409 255.48 radiation 1.0 4320 < th dose dependent rect. 17 1
410 255.49 radiation 10.0 4320 < th dose independent rect. 4 4
412 255.49 radiation 10.0 4320 < th dose independent rect. 20 12
415 255.50 humidity 90.0 43200 > th dose independent rect. 23 1
428 255.50 radiation 10.0 4320 < th dose independent rect. 22 10
440 255.57 humidity 90.0 43200 > th dose dependent rect. 23 1
452 255.62 precipitation 0.1 43200 > th dose independent rect. 20 6
458 255.63 radiation 1.0 4320 < th dose dependent rect. 5 22
459 255.63 radiation 1.0 4320 < th dose dependent rect. 17 23
470 255.69 precipitation 0.1 43200 < th dose independent rect. 20 6
472 255.69 precipitation 0.1 43200 < th dose dependent rect. 20 6
509 255.80 radiation 1.0 14400 < th dose dependent sin 2 NA
566 255.88 radiation 1.0 4320 < th dose dependent no NA NA
592 256.05 radiation 1.0 14400 < th dose dependent rect. 4 3
593 256.05 radiation 1.0 14400 < th dose dependent rect. 2 5
611 256.13 wind 5.0 43200 > th dose dependent rect. 24 1
617 256.15 wind 7.0 43200 > th dose independent rect. 16 1
619 256.19 humidity 90.0 43200 > th dose independent rect. 5 1
635 256.26 wind 1.0 43200 < th dose independent rect. 19 4
655 256.31 temperature 25.0 4320 > th dose independent rect. 11 7
663 256.36 humidity 90.0 43200 > th dose dependent rect. 5 1
664 256.36 radiation 1.0 14400 < th dose dependent rect. 21 10
674 256.40 temperature 25.0 4320 < th dose independent rect. 11 7
683 256.43 radiation 1.0 43200 < th dose independent rect. 15 4
699 256.44 precipitation 0.1 43200 > th dose independent rect. 21 2
737 256.47 precipitation 0.1 43200 < th dose independent rect. 21 2
739 256.47 precipitation 0.1 43200 < th dose dependent rect. 21 2
748 256.48 radiation 30.0 4320 < th dose dependent rect. 20 10
779 256.53 wind 1.0 43200 > th dose independent rect. 19 4
807 256.57 precipitation 0.1 43200 > th dose dependent rect. 21 4
844 256.63 radiation 1.0 4320 < th dose independent rect. 5 17
845 256.63 radiation 1.0 4320 < th dose independent rect. 5 20
862 256.64 radiation 1.0 4320 < th dose independent rect. 5 15
916 256.71 radiation 1.0 14400 > th dose independent rect. 6 13
941 256.73 radiation 1.0 4320 < th dose dependent rect. 17 3
945 256.74 precipitation 0.1 43200 > th dose dependent rect. 20 7
953 256.76 radiation 1.0 4320 < th dose independent rect. 17 23
959 256.78 radiation 1.0 4320 < th dose independent rect. 2 20
960 256.78 radiation 1.0 4320 < th dose independent rect. 24 22
961 256.78 radiation 1.0 4320 < th dose independent rect. 2 23
963 256.78 radiation 1.0 4320 < th dose independent rect. 21 23
966 256.79 radiation 1.0 4320 < th dose independent no NA NA
972 256.79 radiation 1.0 4320 < th dose independent rect. 24 20