BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0604600 Os07g0604600|AK062832
         (127 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G29970.1  | chr3:11745299-11746481 FORWARD LENGTH=88           124   9e-30
AT3G48140.1  | chr3:17778471-17779299 FORWARD LENGTH=89            99   4e-22

>AT3G29970.1 | chr3:11745299-11746481 FORWARD LENGTH=88
          Length = 87

 Score =  124 bits (312), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 51/83 (61%), Positives = 68/83 (81%)

Query: 33  MGRWLKPDVYPLIAAMTFVTGLCTFQLTRNVFMNPDVRVNKNNRKSAVLENAEEGEKYHQ 92
           MGRW++P+VYPL+ AM FVT +  FQLTRN F+NPD R+NK +RK  +LEN +EGEKY Q
Sbjct: 1   MGRWVRPEVYPLLGAMGFVTSMVVFQLTRNAFLNPDCRINKEHRKMGILENKDEGEKYAQ 60

Query: 93  HAFRRFLATQRPEVFPALNRFFA 115
           H FR++L T++P+V P+LNRFF+
Sbjct: 61  HNFRKYLRTRQPQVMPSLNRFFS 83



>AT3G48140.1 | chr3:17778471-17779299 FORWARD LENGTH=89
          Length = 88

 Score = 99.4 bits (246), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 40/83 (48%), Positives = 56/83 (67%)

Query: 35  RWLKPDVYPLIAAMTFVTGLCTFQLTRNVFMNPDVRVNKNNRKSAVLENAEEGEKYHQHA 94
           RWL+P+VYPL AA     G+C F L RN+  NP+VR  K NR + +L+N  EGEKY ++ 
Sbjct: 4   RWLRPEVYPLFAATGVAVGICAFSLIRNITGNPEVRCTKENRAAGILDNHAEGEKYKENF 63

Query: 95  FRRFLATQRPEVFPALNRFFAGP 117
            R+F+  ++PE+ P LN+FF  P
Sbjct: 64  LRKFVRNKKPEIMPGLNKFFTDP 86



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.129    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,402,144
Number of extensions: 79441
Number of successful extensions: 204
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 204
Number of HSP's successfully gapped: 2
Length of query: 127
Length of database: 11,106,569
Length adjustment: 87
Effective length of query: 40
Effective length of database: 8,721,377
Effective search space: 348855080
Effective search space used: 348855080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 105 (45.1 bits)