Os06g0246000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to HvB12D protein (B12Dg1 protein).
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Os06g0246000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to HvB12D protein (B12Dg1 protein).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.08 | 0.258 | 14.4 | -0.208 | 0.724 | 1.58 | 0.579 | -1.71 | 0.136 | 3.14 | 9.614 | 709 | -- | -- |
| 32.37 | 0.265 | 14.3 | 0.0955 | 0.697 | 1.56 | 0.505 | -- | 0.216 | 3.18 | 9.571 | 742 | -- | -- |
| 31.12 | 0.26 | 14.4 | -0.2 | 0.786 | 1.6 | -- | -1.73 | 0.138 | 3.1 | 9.101 | 637 | -- | -- |
| 32.8 | 0.267 | 14.3 | 0.0786 | 0.561 | 1.44 | -- | -- | 0.218 | 2.17 | 7.065 | 969 | -- | -- |
| 48.94 | 0.326 | 14.4 | -0.222 | -- | 1.72 | -- | -1.17 | 0.118 | -- | 8.933 | 1017 | -- | -- |
| 62.61 | 0.371 | 14.3 | 0.485 | 0.759 | -- | 0.17 | -- | 0.455 | 1.21 | -- | -- | -- | -- |
| 62.73 | 0.371 | 14.3 | 0.479 | 0.759 | -- | -- | -- | 0.454 | 1.18 | -- | -- | -- | -- |
| 50.1 | 0.33 | 14.4 | 0.0143 | -- | 1.71 | -- | -- | 0.181 | -- | 8.956 | 1024 | -- | -- |
| 32.81 | 0.267 | 14.4 | -- | 0.602 | 1.39 | -- | -- | 0.201 | 1.13 | 6.818 | 1221 | -- | -- |
| 98.39 | 0.464 | 14.3 | 0.509 | -- | -- | -- | -- | 0.469 | -- | -- | -- | -- | -- |
| 68.78 | 0.388 | 14.3 | -- | 0.767 | -- | -- | -- | 0.4 | 1.2 | -- | -- | -- | -- |
| 50.11 | 0.33 | 14.4 | -- | -- | 1.71 | -- | -- | 0.178 | -- | 9.375 | 1024 | -- | -- |
| 105.22 | 0.479 | 14.3 | -- | -- | -- | -- | -- | 0.413 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.36 | temperature | 30 | 720 | < th | dose dependent | rect. | 14 | 18 |
| 5 | 27.44 | temperature | 10 | 720 | > th | dose dependent | rect. | 14 | 17 |
| 28 | 28.19 | temperature | 10 | 720 | > th | dose dependent | sin | 13 | NA |
| 34 | 28.32 | temperature | 30 | 720 | < th | dose dependent | sin | 13 | NA |
| 96 | 29.18 | temperature | 15 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 103 | 29.23 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 150 | 29.64 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 23 |
| 178 | 29.85 | temperature | 15 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 185 | 29.92 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 23 |
| 200 | 30.00 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 23 |
| 221 | 30.09 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 234 | 30.19 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 272 | 30.40 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 283 | 30.50 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 23 |
| 306 | 30.59 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 23 |
| 327 | 30.69 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 23 |
| 334 | 30.73 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 346 | 30.78 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 388 | 31.03 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 8 |
| 398 | 31.07 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 399 | 31.08 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 462 | 31.23 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 4 |
| 540 | 31.39 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 7 |
| 572 | 31.44 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 2 |