BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0604000 Os07g0604000|AK059691
(212 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0604000 Similar to 6-phosphogluconolactonase-like protein 437 e-123
Os03g0416500 6-phosphogluconolactonase domain containing pr... 363 e-101
Os09g0529100 6-phosphogluconolactonase domain containing pr... 219 8e-58
Os08g0547100 6-phosphogluconolactonase domain containing pr... 214 4e-56
>Os07g0604000 Similar to 6-phosphogluconolactonase-like protein
Length = 212
Score = 437 bits (1124), Expect = e-123, Method: Compositional matrix adjust.
Identities = 212/212 (100%), Positives = 212/212 (100%)
Query: 1 YNKTLDWSKWYIFWSDERAVAKNHAESNYRITKEGFLSKVPILNGHVYSINDNATVEDAA 60
YNKTLDWSKWYIFWSDERAVAKNHAESNYRITKEGFLSKVPILNGHVYSINDNATVEDAA
Sbjct: 1 YNKTLDWSKWYIFWSDERAVAKNHAESNYRITKEGFLSKVPILNGHVYSINDNATVEDAA 60
Query: 61 TDYEFVIRQLVKVRTIGVSESNDCPKFDLILLSMGSDGHVASLFPNHPSLELKDDWITYI 120
TDYEFVIRQLVKVRTIGVSESNDCPKFDLILLSMGSDGHVASLFPNHPSLELKDDWITYI
Sbjct: 61 TDYEFVIRQLVKVRTIGVSESNDCPKFDLILLSMGSDGHVASLFPNHPSLELKDDWITYI 120
Query: 121 TDSPQPPPERITFTLPVINSASNIAIVTTGDDKSEAVHLAISDNADGPEAPSSLPARMVQ 180
TDSPQPPPERITFTLPVINSASNIAIVTTGDDKSEAVHLAISDNADGPEAPSSLPARMVQ
Sbjct: 121 TDSPQPPPERITFTLPVINSASNIAIVTTGDDKSEAVHLAISDNADGPEAPSSLPARMVQ 180
Query: 181 PTDGKLVWFLDKSAASSLDAENDDAFEQHREY 212
PTDGKLVWFLDKSAASSLDAENDDAFEQHREY
Sbjct: 181 PTDGKLVWFLDKSAASSLDAENDDAFEQHREY 212
>Os03g0416500 6-phosphogluconolactonase domain containing protein
Length = 296
Score = 363 bits (931), Expect = e-101, Method: Compositional matrix adjust.
Identities = 171/212 (80%), Positives = 194/212 (91%), Gaps = 1/212 (0%)
Query: 1 YNKTLDWSKWYIFWSDERAVAKNHAESNYRITKEGFLSKVPILNGHVYSINDNATVEDAA 60
YNKTLDWSKWYIFW+DERAVAKNH +S Y+ TKE FLSKVPILNGHVYSINDN TVEDAA
Sbjct: 86 YNKTLDWSKWYIFWADERAVAKNHVDSYYKSTKEDFLSKVPILNGHVYSINDNVTVEDAA 145
Query: 61 TDYEFVIRQLVKVRTIGVSESNDCPKFDLILLSMGSDGHVASLFPNHPSLELKDDWITYI 120
TDYEFVIRQLVK+RT+GVSESNDCPKFDLILLS+GSDGHVASLFPNHP+LELKDDW+TYI
Sbjct: 146 TDYEFVIRQLVKIRTVGVSESNDCPKFDLILLSIGSDGHVASLFPNHPALELKDDWVTYI 205
Query: 121 TDSPQPPPERITFTLPVINSASNIAIVTTGDDKSEAVHLAISDNADGPEAPSSLPARMVQ 180
TDSP PPPERITFTLPVINSASNIA+V TG+DK++AV+ AISD +GP+AP S+PARMVQ
Sbjct: 206 TDSPVPPPERITFTLPVINSASNIAVVATGEDKAKAVYFAISDGTEGPDAP-SIPARMVQ 264
Query: 181 PTDGKLVWFLDKSAASSLDAENDDAFEQHREY 212
PTDGKLVWFLDK++AS L+A+ + +H +Y
Sbjct: 265 PTDGKLVWFLDKASASFLEAKTKNDGYEHPKY 296
>Os09g0529100 6-phosphogluconolactonase domain containing protein
Length = 269
Score = 219 bits (559), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 104/198 (52%), Positives = 134/198 (67%), Gaps = 3/198 (1%)
Query: 1 YNKTLDWSKWYIFWSDERAVAKNHAESNYRITKEGFLSKVPILNGHVYSINDNATVEDAA 60
Y ++DWSKW++FW DER V K+H +SNY++ +GFLSKVPI G VY+IND + E AA
Sbjct: 72 YLDSVDWSKWHVFWVDERVVPKDHEDSNYKLALDGFLSKVPIPTGQVYAINDALSAEGAA 131
Query: 61 TDYEFVIRQLVKVRTIGVSESNDCPKFDLILLSMGSDGHVASLFPNHPSLELKDDWITYI 120
DYE ++QLVK I +S+S P+FD++LL MG DGH+ASLFP HP + W+TYI
Sbjct: 132 DDYETCLKQLVKNGVIAMSQSTGFPRFDVMLLGMGPDGHIASLFPGHPLVNENKKWVTYI 191
Query: 121 TDSPQPPPERITFTLPVINSASNIAIVTTGDDKSEAVHLAISDNADGPEAPSSLPARMVQ 180
DSP+PPPERITFT PVINS++ +A+V TG K+ AV A+SD + LP M
Sbjct: 192 KDSPKPPPERITFTFPVINSSAYVAMVVTGAGKAGAVQKALSDKQTSSDL---LPVEMAV 248
Query: 181 PTDGKLVWFLDKSAASSL 198
DG+ WF DK A S L
Sbjct: 249 LQDGEFTWFTDKPAVSML 266
>Os08g0547100 6-phosphogluconolactonase domain containing protein
Length = 327
Score = 214 bits (544), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 100/200 (50%), Positives = 133/200 (66%), Gaps = 3/200 (1%)
Query: 1 YNKTLDWSKWYIFWSDERAVAKNHAESNYRITKEGFLSKVPILNGHVYSINDNATVEDAA 60
Y + ++WSKW++FW DER V K+HA+SNY++ +G LSKVPI +Y+IND + E AA
Sbjct: 130 YLEAVEWSKWHVFWVDERVVPKDHADSNYKLAMDGLLSKVPIPASQIYAINDTLSAEGAA 189
Query: 61 TDYEFVIRQLVKVRTIGVSESNDCPKFDLILLSMGSDGHVASLFPNHPSLELKDDWITYI 120
+YE ++QLV + +SE PK DL+LL MG DGHVASLFP HP + W++YI
Sbjct: 190 DEYETCLKQLVNDGVVAISEVTGFPKLDLMLLGMGPDGHVASLFPGHPVVNENLKWVSYI 249
Query: 121 TDSPQPPPERITFTLPVINSASNIAIVTTGDDKSEAVHLAISDNADGPEAPSSLPARMVQ 180
DSP+PPPERITFT P++NS+++IA+V TG K+ AVH A SD + LP MV
Sbjct: 250 KDSPKPPPERITFTFPLVNSSAHIALVVTGAGKAGAVHKAFSDKQSSSDL---LPVEMVS 306
Query: 181 PTDGKLVWFLDKSAASSLDA 200
+G L WF DK A S L +
Sbjct: 307 QQEGVLTWFTDKPAVSMLSS 326
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.131 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,013,615
Number of extensions: 337574
Number of successful extensions: 680
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 677
Number of HSP's successfully gapped: 4
Length of query: 212
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 115
Effective length of database: 11,971,043
Effective search space: 1376669945
Effective search space used: 1376669945
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 154 (63.9 bits)