Os07g0604000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 6-phosphogluconolactonase-like protein.
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Os07g0604000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 6-phosphogluconolactonase-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 306.34 | 0.822 | 11.6 | -2 | 1.16 | 1.78 | 1.93 | -1.8 | 0.515 | 21 | 11.26 | 10 | -- | -- |
| 312.92 | 0.824 | 11.6 | -2.02 | 1.09 | 1.88 | 0.189 | -- | 0.527 | 20.5 | 10.99 | 10 | -- | -- |
| 310.64 | 0.821 | 11.6 | -2.03 | 1.08 | 1.9 | -- | -0.644 | 0.522 | 20.4 | 11.37 | 10 | -- | -- |
| 312.98 | 0.824 | 11.6 | -2.02 | 1.09 | 1.88 | -- | -- | 0.526 | 20.5 | 10.96 | 10 | -- | -- |
| 346.3 | 0.867 | 11.5 | -2.03 | -- | 2.35 | -- | -0.586 | 0.541 | -- | 7.63 | 6 | -- | -- |
| 367.94 | 0.899 | 11.6 | -2.01 | 2.92 | -- | -0.0286 | -- | 0.465 | 22.7 | -- | -- | -- | -- |
| 367.94 | 0.898 | 11.6 | -2.01 | 2.92 | -- | -- | -- | 0.465 | 22.7 | -- | -- | -- | -- |
| 348.37 | 0.869 | 11.5 | -2.02 | -- | 2.35 | -- | -- | 0.543 | -- | 7.576 | 6 | -- | -- |
| 417.59 | 0.952 | 11.5 | -- | 1.25 | 1.85 | -- | -- | 0.765 | 20.5 | 16.41 | 15 | -- | -- |
| 895.32 | 1.4 | 11.5 | -1.95 | -- | -- | -- | -- | 0.481 | -- | -- | -- | -- | -- |
| 474.38 | 1.02 | 11.6 | -- | 2.91 | -- | -- | -- | 0.689 | 22.7 | -- | -- | -- | -- |
| 452.84 | 0.991 | 11.5 | -- | -- | 2.33 | -- | -- | 0.765 | -- | 6.663 | 4 | -- | -- |
| 995.89 | 1.47 | 11.5 | -- | -- | -- | -- | -- | 0.698 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 287.68 | humidity | 80 | 14400 | > th | dose dependent | rect. | 13 | 2 |
| 2 | 288.08 | humidity | 80 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 4 | 288.57 | humidity | 80 | 14400 | > th | dose independent | rect. | 13 | 3 |
| 7 | 289.82 | humidity | 80 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 11 | 291.13 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 20 |
| 30 | 292.67 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 23 |
| 33 | 292.74 | humidity | 90 | 14400 | > th | dose dependent | rect. | 12 | 22 |
| 38 | 292.91 | humidity | 90 | 14400 | > th | dose dependent | sin | 16 | NA |
| 44 | 293.07 | humidity | 80 | 14400 | > th | dose independent | rect. | 10 | 6 |
| 48 | 293.13 | humidity | 90 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 55 | 293.30 | humidity | 90 | 14400 | > th | dose dependent | rect. | 15 | 23 |
| 64 | 293.47 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 73 | 293.66 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 23 |
| 76 | 293.74 | humidity | 90 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 82 | 293.80 | humidity | 90 | 14400 | > th | dose dependent | rect. | 9 | 23 |
| 92 | 293.96 | humidity | 90 | 14400 | > th | dose dependent | rect. | 12 | 16 |
| 101 | 294.10 | humidity | 90 | 14400 | > th | dose dependent | rect. | 15 | 11 |
| 124 | 294.47 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 7 |
| 134 | 294.61 | humidity | 90 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 139 | 294.67 | humidity | 80 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 146 | 294.75 | wind | 5 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 193 | 295.34 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 4 |
| 207 | 295.63 | humidity | 80 | 14400 | < th | dose independent | rect. | 10 | 6 |
| 211 | 295.69 | humidity | 90 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 212 | 295.69 | wind | 1 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 219 | 295.78 | humidity | 90 | 14400 | > th | dose dependent | rect. | 20 | 3 |
| 220 | 295.78 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 6 |
| 239 | 296.02 | humidity | 80 | 14400 | > th | dose dependent | rect. | 7 | 9 |
| 282 | 296.75 | humidity | 80 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 315 | 297.18 | humidity | 80 | 14400 | > th | dose dependent | rect. | 9 | 12 |
| 319 | 297.26 | humidity | 80 | 14400 | > th | dose dependent | rect. | 8 | 15 |
| 320 | 297.27 | humidity | 80 | 14400 | > th | dose dependent | sin | 23 | NA |
| 326 | 297.33 | humidity | 90 | 14400 | > th | dose dependent | sin | 2 | NA |
| 382 | 297.83 | humidity | 90 | 14400 | > th | dose independent | rect. | 2 | 20 |
| 410 | 298.09 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 4 |
| 441 | 298.45 | wind | 3 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 445 | 298.53 | humidity | 90 | 14400 | < th | dose independent | rect. | 20 | 2 |
| 450 | 298.57 | wind | 3 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 516 | 299.10 | humidity | 90 | 14400 | > th | dose independent | rect. | 17 | 17 |
| 528 | 299.15 | humidity | 90 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 533 | 299.17 | humidity | 90 | 14400 | > th | dose independent | rect. | 15 | 19 |
| 542 | 299.24 | humidity | 90 | 14400 | > th | dose independent | rect. | 13 | 21 |
| 552 | 299.27 | humidity | 80 | 14400 | > th | dose dependent | rect. | 9 | 2 |
| 572 | 299.39 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 20 |
| 612 | 299.61 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 22 |
| 642 | 299.74 | humidity | 80 | 14400 | > th | dose independent | sin | 22 | NA |
| 675 | 299.90 | humidity | 90 | 14400 | > th | dose independent | rect. | 3 | 7 |
| 701 | 300.06 | humidity | 90 | 14400 | < th | dose independent | rect. | 6 | 4 |
| 704 | 300.08 | humidity | 90 | 14400 | > th | dose independent | rect. | 2 | 9 |
| 770 | 300.36 | humidity | 90 | 14400 | > th | dose independent | no | NA | NA |
| 795 | 300.44 | wind | 3 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 803 | 300.50 | humidity | 90 | 14400 | > th | dose independent | sin | 16 | NA |
| 816 | 300.58 | humidity | 90 | 14400 | > th | dose independent | rect. | 9 | 23 |
| 899 | 300.99 | wind | 3 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 978 | 301.34 | humidity | 90 | 14400 | > th | dose independent | rect. | 12 | 16 |