Os03g0416500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : 6-phosphogluconolactonase domain containing protein.
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Os03g0416500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : 6-phosphogluconolactonase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 201.69 | 0.667 | 6.67 | 0.989 | 1.05 | 4.68 | -1.31 | -3.75 | 0.614 | 19.8 | 20.65 | 114 | 0.221 | -- |
| 210.44 | 0.676 | 6.64 | 1.4 | 1.17 | 4.65 | -0.551 | -- | 0.719 | 19.5 | 20.38 | 113 | 0.286 | -- |
| 205.35 | 0.667 | 6.66 | 1.16 | 1.05 | 4.67 | -- | -2.55 | 0.639 | 19.7 | 20.7 | 113 | 0.315 | -- |
| 210.35 | 0.675 | 6.62 | 1.5 | 1.06 | 4.53 | -- | -- | 0.747 | 19.5 | 20.55 | 113 | 0.338 | -- |
| 225.17 | 0.699 | 6.62 | 1.28 | -- | 4.02 | -- | -2.78 | 0.692 | -- | 22.11 | 142 | 0.86 | -- |
| 457.11 | 1 | 6.4 | 2.17 | 1.11 | -- | 0.912 | -- | 1.46 | 9.5 | -- | -- | -- | -- |
| 460.17 | 1 | 6.4 | 2.2 | 1.1 | -- | -- | -- | 1.46 | 9.55 | -- | -- | -- | -- |
| 231.3 | 0.708 | 6.57 | 1.61 | -- | 3.73 | -- | -- | 0.831 | -- | 21.93 | 157 | 0.864 | -- |
| 266.93 | 0.761 | 6.68 | -- | 1.3 | 5.03 | -- | -- | 0.491 | 19.9 | 20.4 | 113 | 0.254 | -- |
| 531.82 | 1.08 | 6.43 | 2.19 | -- | -- | -- | -- | 1.47 | -- | -- | -- | -- | -- |
| 587.82 | 1.13 | 6.45 | -- | 1.1 | -- | -- | -- | 1.22 | 9.4 | -- | -- | -- | -- |
| 297.06 | 0.803 | 6.63 | -- | -- | 4.02 | -- | -- | 0.587 | -- | 21.94 | 175 | 1.09 | -- |
| 658.63 | 1.2 | 6.48 | -- | -- | -- | -- | -- | 1.22 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 204.53 | temperature | 20 | 90 | > th | dose dependent | sin | 6 | NA |
| 8 | 214.00 | temperature | 30 | 90 | < th | dose dependent | sin | 5 | NA |
| 51 | 231.65 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 14 |
| 57 | 236.08 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 22 |
| 77 | 240.56 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 83 | 242.69 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 84 | 242.81 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 85 | 243.34 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 91 | 244.27 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 92 | 244.96 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 94 | 245.03 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 98 | 245.66 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 111 | 248.99 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 116 | 249.57 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 119 | 249.73 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 18 |
| 122 | 250.46 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 130 | 251.47 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 16 |
| 134 | 251.69 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 140 | 252.59 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 142 | 252.77 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 144 | 252.88 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 147 | 253.19 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 157 | 254.62 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 167 | 255.45 | temperature | 20 | 10 | > th | dose dependent | rect. | 4 | 23 |
| 187 | 258.27 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 197 | 259.33 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 217 | 260.81 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 12 |
| 228 | 261.70 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 236 | 262.28 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 14 |
| 255 | 263.97 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 16 |
| 305 | 267.73 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 22 |
| 370 | 270.77 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 14 |
| 406 | 272.87 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 12 |
| 428 | 274.20 | temperature | 20 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 438 | 274.71 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 443 | 274.90 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 17 |
| 457 | 275.31 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 15 |
| 468 | 276.05 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 493 | 277.10 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 13 |
| 580 | 279.99 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 17 |
| 665 | 282.33 | temperature | 20 | 4320 | < th | dose independent | rect. | 4 | 1 |
| 681 | 282.86 | temperature | 20 | 4320 | > th | dose independent | rect. | 4 | 1 |
| 694 | 283.10 | temperature | 25 | 270 | < th | dose independent | rect. | 22 | 22 |
| 704 | 283.28 | temperature | 20 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 737 | 284.51 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 751 | 284.86 | temperature | 20 | 4320 | > th | dose dependent | rect. | 21 | 3 |
| 763 | 285.11 | temperature | 20 | 4320 | > th | dose dependent | rect. | 21 | 7 |
| 775 | 285.24 | temperature | 25 | 270 | > th | dose independent | sin | 6 | NA |
| 796 | 285.71 | temperature | 25 | 270 | < th | dose independent | sin | 6 | NA |
| 861 | 286.60 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 19 |
| 872 | 286.87 | temperature | 20 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 916 | 287.49 | temperature | 20 | 4320 | > th | dose dependent | rect. | 2 | 1 |
| 962 | 288.20 | temperature | 25 | 4320 | < th | dose dependent | rect. | 20 | 8 |