BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0416500 Os03g0416500|AK103024
(296 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G13700.1 | chr1:4694475-4695600 REVERSE LENGTH=269 334 3e-92
AT5G24400.1 | chr5:8330532-8331784 REVERSE LENGTH=326 236 9e-63
AT3G49360.1 | chr3:18303189-18304283 REVERSE LENGTH=260 207 5e-54
AT5G24420.1 | chr5:8336943-8337879 REVERSE LENGTH=253 202 2e-52
AT5G24410.1 | chr5:8332690-8333984 REVERSE LENGTH=262 196 2e-50
>AT1G13700.1 | chr1:4694475-4695600 REVERSE LENGTH=269
Length = 268
Score = 334 bits (857), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 157/255 (61%), Positives = 200/255 (78%)
Query: 29 KKNNEIRMFESSDEMATDLAEYISQVSEISIKERGYFAIALSGGPLISFMRKLCEAPYNK 88
K EIR+ E+ +E++ DL +YI+++SE SIKE G F I LSGG LISFM KL E PY+K
Sbjct: 8 KDRGEIRVHENLEELSIDLVDYIAEISEASIKEHGAFCIVLSGGSLISFMGKLIEPPYDK 67
Query: 89 TLDWSKWYIFWADERAVAKNHVDSYYKSTKEDFLSKVPILNGHVYSINDNVTVEDAATDY 148
+DW+KWY+FWADER VAKNH DS YK K++ LSKV + H+ SIND V+ E+AAT+Y
Sbjct: 68 IVDWAKWYVFWADERVVAKNHDDSNYKLAKDNLLSKVNVFPRHICSINDTVSAEEAATEY 127
Query: 149 EFVIRQLVKIRTVGVSESNDCPKFDLILLSIGSDGHVASLFPNHPALELKDDWVTYITDS 208
EF IRQ+V+ RTV S+++D P+FDLILL +GSDGHVASLFPNHPALE+KDDWVT++TDS
Sbjct: 128 EFAIRQMVRSRTVAASDNSDSPRFDLILLGMGSDGHVASLFPNHPALEVKDDWVTFLTDS 187
Query: 209 PVPPPERITFTLPVINSASNIAVVATGEDKAKAVYFAISDGTEGPDAPSIPARMVQPTDG 268
PPPERITFTLPVINSA+N+ VVATGE KA A++ AI D + S+PAR+V P++G
Sbjct: 188 HKPPPERITFTLPVINSAANVVVVATGESKANAIHLAIDDLPLPDSSLSLPARLVHPSNG 247
Query: 269 KLVWFLDKASASFLE 283
L+WF+DK + S L+
Sbjct: 248 NLIWFMDKQAGSKLD 262
>AT5G24400.1 | chr5:8330532-8331784 REVERSE LENGTH=326
Length = 325
Score = 236 bits (603), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 121/272 (44%), Positives = 170/272 (62%), Gaps = 6/272 (2%)
Query: 11 SSTENRTMEREIVASYEPKKNNEIRMFESSDEMATDLAEYISQVSEISIKERGYFAIALS 70
SS R ++ + ++ + +++ + + DLA++ + +S+ KERG F + +S
Sbjct: 60 SSDTRRKVKSMATTNIGKEEKKRVEIYDLEENLVIDLAKFTADLSDKFCKERGAFTVVVS 119
Query: 71 GGPLISFMRKLCEAPYNKTLDWSKWYIFWADERAVAKNHVDSYYKSTKEDFLSKVPILNG 130
GG LI +RKL E+PY ++DW++W+ FW DER V KNH DS YK + FLSKVPI G
Sbjct: 120 GGSLIKSLRKLVESPYVDSIDWARWHFFWVDERVVPKNHDDSNYKLAYDSFLSKVPIPPG 179
Query: 131 HVYSINDNVTVEDAATDYEFVIRQLVKIRTVGVSESNDCPKFDLILLSIGSDGHVASLFP 190
+VY+IN+ ++ E AA DYE ++ LV + VSES PKFDL+LL +G DGHVASLFP
Sbjct: 180 NVYAINEALSAEAAADDYETCLKHLVNTNILRVSESTGFPKFDLMLLGMGPDGHVASLFP 239
Query: 191 NHPALELKDDWVTYITDSPVPPPERITFTLPVINSASNIAVVATGEDKAKAVYFAISDGT 250
H WV I+DSP PP ERITFT PVINS++++A+V G KA+AV A+
Sbjct: 240 GHGLCNESKKWVVSISDSPKPPSERITFTFPVINSSAHVALVVCGSGKAEAVEAALKKTG 299
Query: 251 EGPDAPSIPARMVQPTDGKLVWFLDKASASFL 282
P A S+ A + +LVWFLDK ++S L
Sbjct: 300 NVPPAGSVSA------EDELVWFLDKPASSKL 325
>AT3G49360.1 | chr3:18303189-18304283 REVERSE LENGTH=260
Length = 259
Score = 207 bits (527), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 111/252 (44%), Positives = 160/252 (63%), Gaps = 11/252 (4%)
Query: 35 RMFESSDEMATDLAEYISQVSEISIKERGYFAIALSGGPLISFMRKLCEAPYNKTLDWSK 94
R+F++++EMA +LA+Y + +S KERG F + LSGG LI+++ KL EAPY +++WSK
Sbjct: 7 RVFKTNNEMAVELAKYTADLSSKFCKERGVFTVVLSGGDLIAWLWKLLEAPYIDSIEWSK 66
Query: 95 WYIFWADERAVAKNHVDSYYKSTKEDFLSKVPILNGHVYSINDNVTVED----AATDYEF 150
W+IFW DER A +H DS YK + FLSKVP+ ++Y+I++ + E AA YE
Sbjct: 67 WHIFWVDERVCAWDHADSNYKLAYDGFLSKVPVPAENIYAIDNGLGAEGNAELAAERYEE 126
Query: 151 VIRQLVKIRTVGVSESNDCPKFDLILLSIGSDGHVASLFPNHPALELKDDWVTYITDSPV 210
++Q V + +S+ P+FDL LL +G DGH+ASLFP H + K WVT ITDSP
Sbjct: 127 CLKQKVNQNIIRTYKSSGFPQFDLQLLGMGPDGHMASLFPGHAQINEKVKWVTSITDSPK 186
Query: 211 PPPERITFTLPVINSASNIAVVATGEDKAKAVYFAISDGTEGPDAPSIPARMVQPTDGKL 270
PP +RIT TLPVIN AS + +++A +V A++ + P R+ D ++
Sbjct: 187 PPSKRITLTLPVINCASYNVMAVCDKEQADSVAAALNHTKDLP-----AGRLT--ADVEV 239
Query: 271 VWFLDKASASFL 282
VWFLD+A+AS L
Sbjct: 240 VWFLDQAAASKL 251
>AT5G24420.1 | chr5:8336943-8337879 REVERSE LENGTH=253
Length = 252
Score = 202 bits (513), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 107/251 (42%), Positives = 154/251 (61%), Gaps = 10/251 (3%)
Query: 36 MFESSDEMATDLAEYISQVSEISIKERGYFAIALSGGPLISFMRKLCEAPYNKTLDWSKW 95
+F + +E++ +AEY + +S IKE+G F + LSGG LI ++ KL + PY +++W KW
Sbjct: 8 VFPTKNELSEAMAEYTANLSAKFIKEKGLFTVVLSGGDLIDWLCKLVQPPYIDSIEWPKW 67
Query: 96 YIFWADERAVAKNHVDSYYKSTKEDFLSKVPILNGHVYSINDNVTV----EDAATDYEFV 151
++FW DER A DS YK E FLSKVPI + ++Y+I+ ++ E AT YE
Sbjct: 68 HVFWVDERVCAWEDPDSNYKLAMEGFLSKVPIPDKNIYAIDKHLAADGNAEHCATLYEEC 127
Query: 152 IRQLVKIRTVGVSESNDCPKFDLILLSIGSDGHVASLFPNHPALELKDDWVTYITDSPVP 211
++ LVK + + +S+ P+FDL LL +G DGH+ASLFPNHP + K WVTYITDSP P
Sbjct: 128 LKNLVKEKIIPISKKTGYPEFDLQLLGMGPDGHMASLFPNHPQINEKQKWVTYITDSPKP 187
Query: 212 PPERITFTLPVINSASNIAVVATGEDKAKAVYFAISDGTEGPDAPSIPARMVQPTDGKLV 271
PP+RITFTLPVINS + + AK+V + + + A++ V
Sbjct: 188 PPKRITFTLPVINSTLYNLMAICDKAPAKSVAEIMKHNNLSLPSAHLSAQVEN------V 241
Query: 272 WFLDKASASFL 282
W+LD+A+AS L
Sbjct: 242 WYLDQAAASEL 252
>AT5G24410.1 | chr5:8332690-8333984 REVERSE LENGTH=262
Length = 261
Score = 196 bits (497), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 110/262 (41%), Positives = 159/262 (60%), Gaps = 11/262 (4%)
Query: 23 VASYEPKKNNEIRMFESSDEMATDLAEYISQVSEISIKERGYFAIALSGGPLISFMRKLC 82
+AS K ++ +F + E++ +A Y + +S KERGYF + LSGG LIS++ +L
Sbjct: 1 MASVLEKTKSKKIVFPTKKELSEAMATYTANLSAKFCKERGYFTVVLSGGDLISWLSELL 60
Query: 83 EAPYNKTLDWSKWYIFWADERAVAKNHVDSYYKSTKEDFLSKVPILNGHVYSINDNVT-- 140
E Y ++++WSKW+IFW DER V +H DS YK + FLSKVPI ++Y I+ +
Sbjct: 61 EPKYQESIEWSKWHIFWVDERVVPLDHEDSNYKLAFDGFLSKVPIPIANIYPIDKDCAAL 120
Query: 141 --VEDAATDYEFVIRQLVKIRTVGVSESNDCPKFDLILLSIGSDGHVASLFPNHPALELK 198
+ AA YE +++LV + +S+ P+FDL LL +G DGH+ASLFP H ++ K
Sbjct: 121 GDAKSAALLYEECLKRLVNRNIIRTYKSSGFPQFDLQLLGMGPDGHMASLFPGHYQIKEK 180
Query: 199 DDWVTYITDSPVPPPERITFTLPVINSASNIAVVATGEDKAKAVYFAISDGTEGPDAPSI 258
+ VTYITDSP PPP+RITFTLPVIN AS + E +A AV + + +
Sbjct: 181 ANLVTYITDSPKPPPKRITFTLPVINCASYNLMAVCDEAQADAVAKVFNHNFD------L 234
Query: 259 PARMVQPTDGKLVWFLDKASAS 280
PA + D + +WFLD+A+AS
Sbjct: 235 PAAWLT-ADVEAIWFLDQAAAS 255
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.131 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,861,140
Number of extensions: 284221
Number of successful extensions: 575
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 568
Number of HSP's successfully gapped: 5
Length of query: 296
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 198
Effective length of database: 8,419,801
Effective search space: 1667120598
Effective search space used: 1667120598
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 111 (47.4 bits)