Os09g0529100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : 6-phosphogluconolactonase domain containing protein.
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Os09g0529100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : 6-phosphogluconolactonase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.61 | 0.238 | 14.3 | -1.02 | 0.585 | -0.574 | 0.194 | 2.54 | -0.235 | 14 | 30.72 | 828 | -- | -- |
| 28.11 | 0.247 | 14.3 | -0.847 | 0.549 | -0.721 | 0.508 | -- | -0.244 | 14.5 | 39.92 | 11712 | -- | -- |
| 25.74 | 0.236 | 14.3 | -1.02 | 0.588 | -0.57 | -- | 2.55 | -0.236 | 14 | 30.4 | 834 | -- | -- |
| 27.51 | 0.244 | 14.3 | -0.934 | 0.575 | -0.898 | -- | -- | -0.23 | 14.7 | 22.94 | 9635 | -- | -- |
| 36.68 | 0.282 | 14.3 | -0.82 | -- | -1.08 | -- | 1.63 | -0.212 | -- | 139.9 | 95 | -- | -- |
| 36.62 | 0.284 | 14.2 | -0.374 | 0.538 | -- | 0.491 | -- | 0.00221 | 14.5 | -- | -- | -- | -- |
| 37.42 | 0.286 | 14.2 | -0.361 | 0.543 | -- | -- | -- | 0.00551 | 14.7 | -- | -- | -- | -- |
| 38.55 | 0.289 | 14.3 | -0.583 | -- | -1.06 | -- | -- | -0.149 | -- | 165.1 | 41 | -- | -- |
| 38.86 | 0.29 | 14.2 | -- | 0.56 | -0.318 | -- | -- | -0.00161 | 14.7 | 40.83 | 1537 | -- | -- |
| 54.59 | 0.345 | 14.2 | -0.384 | -- | -- | -- | -- | -0.0083 | -- | -- | -- | -- | -- |
| 40.86 | 0.299 | 14.2 | -- | 0.55 | -- | -- | -- | 0.0457 | 14.7 | -- | -- | -- | -- |
| 46.82 | 0.32 | 14.2 | -- | -- | -0.872 | -- | -- | -0.0646 | -- | 165.1 | 41 | -- | -- |
| 58.49 | 0.357 | 14.2 | -- | -- | -- | -- | -- | 0.0343 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.70 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 15 |
| 3 | 24.75 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 18 |
| 5 | 24.83 | temperature | 30 | 720 | < th | dose dependent | sin | 4 | NA |
| 11 | 24.88 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 18 |
| 12 | 24.90 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 20 |
| 18 | 24.93 | temperature | 15 | 720 | > th | dose dependent | sin | 4 | NA |
| 30 | 25.01 | humidity | 80 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 35 | 25.03 | humidity | 80 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 42 | 25.06 | humidity | 80 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 48 | 25.08 | humidity | 80 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 61 | 25.15 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 66 | 25.16 | humidity | 80 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 76 | 25.20 | temperature | 15 | 270 | > th | dose dependent | rect. | 4 | 22 |
| 81 | 25.24 | humidity | 90 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 92 | 25.29 | humidity | 80 | 43200 | > th | dose independent | rect. | 15 | 3 |
| 113 | 25.39 | humidity | 80 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 122 | 25.42 | humidity | 80 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 123 | 25.42 | humidity | 80 | 43200 | > th | dose independent | rect. | 14 | 6 |
| 128 | 25.44 | humidity | 80 | 43200 | > th | dose independent | rect. | 9 | 11 |
| 129 | 25.44 | humidity | 80 | 43200 | < th | dose independent | rect. | 9 | 11 |
| 154 | 25.49 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 2 |
| 164 | 25.52 | humidity | 90 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 166 | 25.52 | humidity | 80 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 167 | 25.52 | humidity | 80 | 43200 | > th | dose dependent | rect. | 18 | 2 |
| 168 | 25.52 | humidity | 80 | 43200 | > th | dose dependent | rect. | 7 | 13 |
| 185 | 25.55 | humidity | 80 | 43200 | < th | dose independent | rect. | 13 | 7 |
| 191 | 25.56 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 2 |
| 244 | 25.64 | humidity | 80 | 43200 | > th | dose dependent | rect. | 15 | 5 |
| 261 | 25.66 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 264 | 25.67 | temperature | 15 | 720 | > th | dose dependent | rect. | 18 | 23 |
| 269 | 25.69 | radiation | 1 | 14400 | > th | dose independent | rect. | 7 | 7 |
| 270 | 25.69 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 277 | 25.70 | radiation | 1 | 43200 | > th | dose independent | rect. | 15 | 14 |
| 279 | 25.70 | radiation | 1 | 43200 | < th | dose independent | rect. | 15 | 15 |
| 287 | 25.71 | radiation | 1 | 14400 | < th | dose independent | rect. | 7 | 7 |
| 296 | 25.72 | humidity | 60 | 43200 | < th | dose independent | rect. | 14 | 21 |
| 317 | 25.75 | humidity | 90 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 322 | 25.75 | humidity | 60 | 43200 | > th | dose independent | rect. | 14 | 21 |
| 327 | 25.76 | radiation | 1 | 43200 | > th | dose independent | rect. | 16 | 2 |
| 361 | 25.78 | radiation | 1 | 43200 | > th | dose independent | sin | 13 | NA |
| 363 | 25.78 | radiation | 1 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 364 | 25.78 | radiation | 1 | 43200 | < th | dose independent | rect. | 15 | 3 |
| 386 | 25.79 | radiation | 1 | 43200 | < th | dose independent | sin | 13 | NA |
| 411 | 25.79 | radiation | 1 | 43200 | > th | dose independent | rect. | 14 | 20 |
| 412 | 25.79 | radiation | 1 | 43200 | > th | dose independent | rect. | 14 | 22 |
| 413 | 25.79 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 415 | 25.79 | temperature | 30 | 4320 | < th | dose dependent | rect. | 13 | 1 |
| 439 | 25.80 | radiation | 1 | 43200 | > th | dose independent | rect. | 9 | 21 |
| 441 | 25.80 | radiation | 1 | 43200 | < th | dose independent | rect. | 9 | 21 |
| 444 | 25.80 | radiation | 1 | 43200 | < th | dose dependent | rect. | 15 | 3 |
| 467 | 25.81 | radiation | 1 | 43200 | < th | dose independent | rect. | 14 | 20 |
| 470 | 25.81 | radiation | 1 | 43200 | < th | dose independent | rect. | 14 | 22 |
| 486 | 25.82 | radiation | 1 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 528 | 25.84 | wind | 9 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 541 | 25.84 | radiation | 1 | 43200 | > th | dose independent | rect. | 11 | 23 |
| 543 | 25.84 | radiation | 1 | 43200 | < th | dose independent | rect. | 11 | 23 |
| 549 | 25.85 | radiation | 1 | 43200 | > th | dose independent | no | NA | NA |
| 564 | 25.85 | humidity | 90 | 43200 | < th | dose independent | rect. | 6 | 15 |
| 565 | 25.85 | radiation | 1 | 43200 | > th | dose independent | rect. | 4 | 15 |
| 616 | 25.85 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 23 |
| 635 | 25.86 | radiation | 1 | 43200 | < th | dose independent | no | NA | NA |
| 642 | 25.86 | radiation | 1 | 43200 | > th | dose independent | rect. | 9 | 10 |
| 645 | 25.86 | radiation | 1 | 43200 | > th | dose independent | rect. | 4 | 13 |
| 647 | 25.86 | radiation | 1 | 43200 | < th | dose independent | rect. | 4 | 13 |
| 789 | 25.87 | temperature | 30 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 795 | 25.88 | radiation | 1 | 43200 | < th | dose independent | rect. | 9 | 10 |
| 836 | 25.88 | radiation | 1 | 43200 | < th | dose dependent | rect. | 9 | 9 |
| 849 | 25.89 | radiation | 1 | 14400 | > th | dose independent | rect. | 7 | 3 |
| 887 | 25.89 | radiation | 1 | 4320 | < th | dose dependent | rect. | 16 | 1 |
| 894 | 25.90 | humidity | 80 | 43200 | > th | dose independent | rect. | 9 | 4 |
| 897 | 25.90 | humidity | 60 | 43200 | > th | dose independent | rect. | 16 | 8 |
| 959 | 25.91 | radiation | 1 | 14400 | < th | dose independent | rect. | 7 | 3 |