BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0597000 Os07g0597000|AK103429
(160 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0597000 Similar to Eukaryotic translation initiation f... 331 2e-91
Os12g0507200 Similar to Eukaryotic translation initiation f... 320 4e-88
Os03g0758800 Similar to Eukaryotic translation initiation f... 313 4e-86
Os07g0112800 Similar to Eukaryotic translation initiation f... 306 6e-84
D10399 191 2e-49
AK110635 187 3e-48
Os07g0236250 Similar to Eukaryotic translation initiation f... 112 1e-25
Os07g0236100 76 9e-15
>Os07g0597000 Similar to Eukaryotic translation initiation factor 5A (eIF-5A)
Length = 160
Score = 331 bits (848), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 160/160 (100%), Positives = 160/160 (100%)
Query: 1 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCH 60
MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCH
Sbjct: 1 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCH 60
Query: 61 FVAIDIFNGKKLEDIVPSSHNCDVPHVNRTEYQLIDISEDGFVSLLTESGNTKDDLRLPT 120
FVAIDIFNGKKLEDIVPSSHNCDVPHVNRTEYQLIDISEDGFVSLLTESGNTKDDLRLPT
Sbjct: 61 FVAIDIFNGKKLEDIVPSSHNCDVPHVNRTEYQLIDISEDGFVSLLTESGNTKDDLRLPT 120
Query: 121 DDSLLGQIKTGFGEGKDLVVTVMSAMGEEQICALKDIGPK 160
DDSLLGQIKTGFGEGKDLVVTVMSAMGEEQICALKDIGPK
Sbjct: 121 DDSLLGQIKTGFGEGKDLVVTVMSAMGEEQICALKDIGPK 160
>Os12g0507200 Similar to Eukaryotic translation initiation factor 5A-2 (eIF-5A-2)
(eIF-4D)
Length = 160
Score = 320 bits (819), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 154/160 (96%), Positives = 156/160 (97%)
Query: 1 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCH 60
MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCH
Sbjct: 1 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCH 60
Query: 61 FVAIDIFNGKKLEDIVPSSHNCDVPHVNRTEYQLIDISEDGFVSLLTESGNTKDDLRLPT 120
FVAIDIF KKLEDIVPSSHNCDVPHVNRTEYQLIDISEDGFVSLLTE+GNTKDDLRLPT
Sbjct: 61 FVAIDIFTAKKLEDIVPSSHNCDVPHVNRTEYQLIDISEDGFVSLLTENGNTKDDLRLPT 120
Query: 121 DDSLLGQIKTGFGEGKDLVVTVMSAMGEEQICALKDIGPK 160
DD+LL QIK GFGEGKDLVVTVMSAMGEEQICALKDIGPK
Sbjct: 121 DDNLLSQIKDGFGEGKDLVVTVMSAMGEEQICALKDIGPK 160
>Os03g0758800 Similar to Eukaryotic translation initiation factor 5A-2 (eIF-5A-2)
(eIF-4D)
Length = 161
Score = 313 bits (801), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 150/160 (93%), Positives = 156/160 (97%)
Query: 1 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCH 60
MSDSEEHHFESKADAGASKTYPQQAGTIRKNG+IVIKNRPCKVVEVSTSKTGKHGHAKCH
Sbjct: 1 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCH 60
Query: 61 FVAIDIFNGKKLEDIVPSSHNCDVPHVNRTEYQLIDISEDGFVSLLTESGNTKDDLRLPT 120
FVAIDIFNGKKLEDIVPSSHNCDVPHVNRT+YQLIDISEDGFVSLLTESG TKDDLRLP+
Sbjct: 61 FVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTESGGTKDDLRLPS 120
Query: 121 DDSLLGQIKTGFGEGKDLVVTVMSAMGEEQICALKDIGPK 160
D++LL QIK GF EGKDL+VTVMSAMGEEQICALKDIGPK
Sbjct: 121 DEALLTQIKDGFAEGKDLIVTVMSAMGEEQICALKDIGPK 160
>Os07g0112800 Similar to Eukaryotic translation initiation factor 5A-4 (eIF-5A-4)
Length = 162
Score = 306 bits (783), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 147/161 (91%), Positives = 155/161 (96%), Gaps = 1/161 (0%)
Query: 1 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCH 60
MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCH
Sbjct: 1 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCH 60
Query: 61 FVAIDIFNGKKLEDIVPSSHNCDVPHVNRTEYQLIDISEDGFVSLLTESGNTKDDLRLPT 120
FV IDIFNGKKLEDIVPSSHNCDVPHV+RT+YQLIDISEDGFVSLLTESGNTKDDLRLPT
Sbjct: 61 FVGIDIFNGKKLEDIVPSSHNCDVPHVDRTDYQLIDISEDGFVSLLTESGNTKDDLRLPT 120
Query: 121 DDSLLGQIKTGFG-EGKDLVVTVMSAMGEEQICALKDIGPK 160
DD+L QIK GFG EGKD+++TVMSAMGEEQICA+K+IG K
Sbjct: 121 DDTLTNQIKNGFGEEGKDMILTVMSAMGEEQICAVKEIGAK 161
>D10399
Length = 95
Score = 191 bits (485), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 90/92 (97%), Positives = 90/92 (97%)
Query: 1 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCH 60
MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCH
Sbjct: 1 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCH 60
Query: 61 FVAIDIFNGKKLEDIVPSSHNCDVPHVNRTEY 92
FVAIDIF KKLEDIVPSSHNCDVPHVNRTEY
Sbjct: 61 FVAIDIFTAKKLEDIVPSSHNCDVPHVNRTEY 92
>AK110635
Length = 162
Score = 187 bits (474), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 92/157 (58%), Positives = 123/157 (78%), Gaps = 5/157 (3%)
Query: 2 SDSEEHH--FESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKC 59
SD E+H+ FES ADAG+S T+P Q +RKNG++VIK RPCK++++STSKTGKHGHAK
Sbjct: 4 SDDEQHNATFES-ADAGSSLTFPMQCSALRKNGHVVIKGRPCKIIDMSTSKTGKHGHAKV 62
Query: 60 HFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTEYQLIDISEDGFVSLLTESGNTKDDLRLP 119
H VA DIF KK EDI PS+HN DVP+V+R E+QL++I +DG+++L+T G+TKDD+R+P
Sbjct: 63 HLVATDIFTSKKYEDISPSTHNMDVPNVSRNEFQLVNI-DDGYLNLMTNDGDTKDDVRVP 121
Query: 120 TDDSLLGQIKTGFGEGKDLVVTVMSAMGEEQICALKD 156
D L QI+ F +GKDL+VT++SAMGEE + KD
Sbjct: 122 -DGELGEQIQAAFDDGKDLMVTIVSAMGEEHCLSFKD 157
>Os07g0236250 Similar to Eukaryotic translation initiation factor 5A-1 (eIF-5A-1)
Length = 175
Score = 112 bits (280), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/66 (84%), Positives = 60/66 (90%), Gaps = 1/66 (1%)
Query: 86 HVNRTEYQLIDISEDG-FVSLLTESGNTKDDLRLPTDDSLLGQIKTGFGEGKDLVVTVMS 144
H+NRT YQLIDISEDG FVSLLTESGNTKDDL LPT D+LLGQIKTGFGEGKD+VVTVMS
Sbjct: 46 HMNRTNYQLIDISEDGLFVSLLTESGNTKDDLGLPTYDNLLGQIKTGFGEGKDVVVTVMS 105
Query: 145 AMGEEQ 150
AMG +
Sbjct: 106 AMGRSR 111
>Os07g0236100
Length = 181
Score = 76.3 bits (186), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 47/76 (61%), Positives = 52/76 (68%), Gaps = 11/76 (14%)
Query: 86 HVNRTEYQLIDISEDG-FVSLLTESGNTKDDLRLPTDDSLLGQIKTGFGEGKDLVVTVMS 144
H+NRT YQLIDISEDG FVSLLTESGNTKDDL LPT+ G+ + DLV
Sbjct: 116 HMNRTNYQLIDISEDGLFVSLLTESGNTKDDLGLPTETISWGRSRL------DLV----K 165
Query: 145 AMGEEQICALKDIGPK 160
A EE+I ALKDIG K
Sbjct: 166 ARKEEEIYALKDIGTK 181
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.133 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,484,656
Number of extensions: 216492
Number of successful extensions: 327
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 322
Number of HSP's successfully gapped: 8
Length of query: 160
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 67
Effective length of database: 12,179,899
Effective search space: 816053233
Effective search space used: 816053233
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 152 (63.2 bits)