BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0585100 Os07g0585100|AK103268
(336 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0585100 Armadillo-like helical domain containing protein 691 0.0
Os03g0172200 Armadillo-like helical domain containing protein 473 e-134
Os07g0647100 Armadillo-like helical domain containing protein 284 8e-77
Os03g0359700 Armadillo-like helical domain containing protein 276 2e-74
>Os07g0585100 Armadillo-like helical domain containing protein
Length = 336
Score = 691 bits (1783), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/336 (100%), Positives = 336/336 (100%)
Query: 1 MKGLFKSKPRTPADVVRQTRELLIFLDLHSGSRGGDAKREEKMAELSKNIRELKSILYGN 60
MKGLFKSKPRTPADVVRQTRELLIFLDLHSGSRGGDAKREEKMAELSKNIRELKSILYGN
Sbjct: 1 MKGLFKSKPRTPADVVRQTRELLIFLDLHSGSRGGDAKREEKMAELSKNIRELKSILYGN 60
Query: 61 GESEPVTEACVQLTQEFFRENTLRLLIICLPKLNLETRKDATQVVANLQRQQVSSKIVAS 120
GESEPVTEACVQLTQEFFRENTLRLLIICLPKLNLETRKDATQVVANLQRQQVSSKIVAS
Sbjct: 61 GESEPVTEACVQLTQEFFRENTLRLLIICLPKLNLETRKDATQVVANLQRQQVSSKIVAS 120
Query: 121 EYLEANKDLLDTLISGYENMDIALHYGSMLRECIRHQSIARYVLESDHMKKFFDYIQLPN 180
EYLEANKDLLDTLISGYENMDIALHYGSMLRECIRHQSIARYVLESDHMKKFFDYIQLPN
Sbjct: 121 EYLEANKDLLDTLISGYENMDIALHYGSMLRECIRHQSIARYVLESDHMKKFFDYIQLPN 180
Query: 181 FDIASDASATFKELLTRHKATVAEFLSKNYDWFFSEFNTRLLSSTNYITKRQAIKFLGDM 240
FDIASDASATFKELLTRHKATVAEFLSKNYDWFFSEFNTRLLSSTNYITKRQAIKFLGDM
Sbjct: 181 FDIASDASATFKELLTRHKATVAEFLSKNYDWFFSEFNTRLLSSTNYITKRQAIKFLGDM 240
Query: 241 LLDRSNSTVMMRYVSSKDNLMILMNLLRDSSKNIQIEAFHVFKLFAANKNKPTEVVNILV 300
LLDRSNSTVMMRYVSSKDNLMILMNLLRDSSKNIQIEAFHVFKLFAANKNKPTEVVNILV
Sbjct: 241 LLDRSNSTVMMRYVSSKDNLMILMNLLRDSSKNIQIEAFHVFKLFAANKNKPTEVVNILV 300
Query: 301 TNRSKLLRFFAGFKIDKEDEQFEADKEQVIKEISAL 336
TNRSKLLRFFAGFKIDKEDEQFEADKEQVIKEISAL
Sbjct: 301 TNRSKLLRFFAGFKIDKEDEQFEADKEQVIKEISAL 336
>Os03g0172200 Armadillo-like helical domain containing protein
Length = 358
Score = 473 bits (1217), Expect = e-134, Method: Compositional matrix adjust.
Identities = 224/338 (66%), Positives = 277/338 (81%), Gaps = 4/338 (1%)
Query: 3 GLFKSKPRTPADVVRQTRELLIFLDLHSGSRGG--DAKREEKMAELSKNIRELKSILYGN 60
LF+SK R P +VVR RELL FL + + G D KRE KM +L+K+I E+KSILYGN
Sbjct: 21 SLFRSKARGPVEVVRHARELLAFLAENHDACGDKRDVKREHKMVDLAKSIGEMKSILYGN 80
Query: 61 GESEPVTEACVQLTQEFFRENT--LRLLIICLPKLNLETRKDATQVVANLQRQQVSSKIV 118
GE++PV EAC QLT+EFF+ENT L LL++CLP ++LET+KD TQV ANL RQ+V ++V
Sbjct: 81 GEADPVDEACSQLTKEFFKENTNSLHLLVVCLPYMDLETQKDVTQVTANLLRQKVDYRMV 140
Query: 119 ASEYLEANKDLLDTLISGYENMDIALHYGSMLRECIRHQSIARYVLESDHMKKFFDYIQL 178
AS+YLE N+DLLD L+SGY+NMDIA+HY ++LR+CIRHQ ARYVLES HMKKFFDYIQ
Sbjct: 141 ASDYLEENQDLLDVLMSGYDNMDIAIHYSAILRDCIRHQVAARYVLESQHMKKFFDYIQY 200
Query: 179 PNFDIASDASATFKELLTRHKATVAEFLSKNYDWFFSEFNTRLLSSTNYITKRQAIKFLG 238
P+F+IASDA TFKELLTRH+++ AEF S NYDWFF EFN++LLSS+NYI +RQA + LG
Sbjct: 201 PDFNIASDAFKTFKELLTRHRSSAAEFFSNNYDWFFPEFNSKLLSSSNYIIRRQATQLLG 260
Query: 239 DMLLDRSNSTVMMRYVSSKDNLMILMNLLRDSSKNIQIEAFHVFKLFAANKNKPTEVVNI 298
D+LLD+SN+T M+RYVSSKDNL+ILMNLLR+ S+ IQ+EAF VFKLF N KP E+V I
Sbjct: 261 DILLDKSNTTAMVRYVSSKDNLIILMNLLREQSRAIQVEAFRVFKLFTCNPKKPPEIVGI 320
Query: 299 LVTNRSKLLRFFAGFKIDKEDEQFEADKEQVIKEISAL 336
LVTN+SK+LRF A F I+KED+QFEADK QV+ EISA+
Sbjct: 321 LVTNKSKILRFLADFTIEKEDQQFEADKAQVVTEISAM 358
>Os07g0647100 Armadillo-like helical domain containing protein
Length = 337
Score = 284 bits (726), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 144/341 (42%), Positives = 220/341 (64%), Gaps = 14/341 (4%)
Query: 1 MKGLFKSKPR----TPADVVRQTRELLIFLDLHSGSRGGDAKREEKMAELSKNIRELKSI 56
M F++ R +P ++VR +E L+ LD +G++ + ++ KN+ L+
Sbjct: 1 MSFFFRAASRPARPSPQELVRSIKESLLALDTRTGAKA--------LEDVEKNVSTLRQT 52
Query: 57 LYGNGESEPVTEACVQLTQEFFRENTLRLLIICLPKLNLETRKDATQVVANLQRQQVSSK 116
L G+GE EP E +Q+ E +E+ L L + +P L E RKD + L RQ+V
Sbjct: 53 LSGDGEVEPNQEQVLQIALEICKEDVLSLFVQNMPSLGWEGRKDLAHCWSILLRQKVDEA 112
Query: 117 IVASEYLEANKDLLDTLISGYENMDIALHYGSMLRECIRHQSIARYVLESDHMKKFFDYI 176
+Y+E + DLLD L+ Y+N+++AL+ G+MLRECI++ ++A+Y+LES + FF Y+
Sbjct: 113 YCCVQYIENHFDLLDFLVVCYKNLEVALNCGNMLRECIKYPTLAKYILESSSFELFFQYV 172
Query: 177 QLPNFDIASDASATFKELLTRHKATVAEFLSKNYDWFFSEFNTRLLSSTNYITKRQAIKF 236
+L NFDIASDA TFK+LLT+H+A V+EFL +Y+ FF E TRLL+STNY+T+RQ++KF
Sbjct: 173 ELSNFDIASDALNTFKDLLTKHEAAVSEFLCSHYEQFF-ELYTRLLTSTNYVTRRQSVKF 231
Query: 237 LGDMLLDRSNSTVMMRYVSSKDNLMILMNLLRDSSKNIQIEAFHVFKLFAANKNKPTEVV 296
L + LL+ N+ +M RY+ L I++ LL+D+SKNI+I AFH+FK+F AN NKP +++
Sbjct: 232 LSEFLLEAPNAQIMKRYIVEVSYLNIMIGLLKDTSKNIRICAFHIFKVFVANPNKPRDII 291
Query: 297 NILVTNRSKLLRFFAGFKIDK-EDEQFEADKEQVIKEISAL 336
+LV N +LL+ K EDEQ E +++ +IKEI L
Sbjct: 292 QVLVDNHRELLKLLGNLPTSKGEDEQLEEERDLIIKEIEKL 332
>Os03g0359700 Armadillo-like helical domain containing protein
Length = 336
Score = 276 bits (706), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 137/329 (41%), Positives = 211/329 (64%), Gaps = 9/329 (2%)
Query: 8 KPRTPADVVRQTRELLIFLDLHSGSRGGDAKREEKMAELSKNIRELKSILYGNGESEPVT 67
+P TP +VVR ++ L +G+R + E+ KN+ L+ +L G+GE+EP
Sbjct: 12 RPSTPEEVVRSIKDSFQALHTKNGARA--------LEEVEKNLSSLRQMLSGDGEAEPNQ 63
Query: 68 EACVQLTQEFFRENTLRLLIICLPKLNLETRKDATQVVANLQRQQVSSKIVASEYLEANK 127
E +Q+T E +E+ L L + LP L RKD L RQ+ +Y+E +
Sbjct: 64 EQVLQITLEICKEDVLSLFVQNLPSLGWGVRKDLVHCWCILLRQKFDESYCCVKYIENHL 123
Query: 128 DLLDTLISGYENMDIALHYGSMLRECIRHQSIARYVLESDHMKKFFDYIQLPNFDIASDA 187
+LLD L+ Y+N+D+AL+ G+MLRECI++ ++ +Y+L+S + FF+Y++LPNFDIASDA
Sbjct: 124 ELLDFLVGCYKNLDVALNCGNMLRECIKYPTLTKYILDSSSFELFFEYVELPNFDIASDA 183
Query: 188 SATFKELLTRHKATVAEFLSKNYDWFFSEFNTRLLSSTNYITKRQAIKFLGDMLLDRSNS 247
TFK+LLT+H+ VAEFLS +Y+ FF E TRLL+S NY+T+RQ++KFL + LL+ N+
Sbjct: 184 LNTFKDLLTKHETVVAEFLSSHYEQFF-ELYTRLLTSPNYVTRRQSVKFLSEFLLEAPNA 242
Query: 248 TVMMRYVSSKDNLMILMNLLRDSSKNIQIEAFHVFKLFAANKNKPTEVVNILVTNRSKLL 307
+M RY++ L I++ LL+DSSKNI+I AFHVFK+F AN NKP ++ L+ NR +LL
Sbjct: 243 RIMKRYITEVRFLNIMITLLKDSSKNIRICAFHVFKVFVANPNKPRSIIEALIENRRELL 302
Query: 308 RFFAGFKIDKEDEQFEADKEQVIKEISAL 336
+ K +++ + ++ +I+ I L
Sbjct: 303 KLLQNLPTSKGEDELDEERNLIIQGIQKL 331
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.134 0.367
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,296,614
Number of extensions: 337873
Number of successful extensions: 879
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 871
Number of HSP's successfully gapped: 4
Length of query: 336
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 235
Effective length of database: 11,762,187
Effective search space: 2764113945
Effective search space used: 2764113945
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)