Os03g0359700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Armadillo-like helical domain containing protein.
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Os03g0359700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Armadillo-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 61.45 | 0.368 | 8.74 | -1.05 | 0.491 | 0.955 | -0.433 | -0.578 | -0.0854 | 2.61 | 21.3 | 1320 | -- | -- |
| 62.31 | 0.368 | 8.74 | -0.962 | 0.499 | 1.03 | -0.43 | -- | -0.0842 | 2.5 | 21.26 | 1321 | -- | -- |
| 61.83 | 0.366 | 8.74 | -1.06 | 0.465 | 0.937 | -- | -0.706 | -0.0867 | 2.74 | 21.3 | 1208 | -- | -- |
| 62.99 | 0.37 | 8.72 | -0.901 | 0.49 | 1.01 | -- | -- | -0.0544 | 2.56 | 21.24 | 1320 | -- | -- |
| 73.79 | 0.4 | 8.74 | -1.07 | -- | 0.989 | -- | -0.756 | -0.0943 | -- | 21.21 | 1129 | -- | -- |
| 90.08 | 0.445 | 8.66 | -0.497 | 0.551 | -- | -0.611 | -- | 0.217 | 2.53 | -- | -- | -- | -- |
| 91.41 | 0.448 | 8.66 | -0.481 | 0.549 | -- | -- | -- | 0.22 | 2.46 | -- | -- | -- | -- |
| 75.2 | 0.404 | 8.72 | -0.882 | -- | 1.05 | -- | -- | -0.0536 | -- | 21.2 | 1125 | -- | -- |
| 79.77 | 0.416 | 8.69 | -- | 0.451 | 0.643 | -- | -- | 0.0801 | 2.3 | 22.3 | 1240 | -- | -- |
| 109.14 | 0.488 | 8.65 | -0.458 | -- | -- | -- | -- | 0.234 | -- | -- | -- | -- | -- |
| 97.51 | 0.462 | 8.65 | -- | 0.539 | -- | -- | -- | 0.274 | 2.45 | -- | -- | -- | -- |
| 91.5 | 0.446 | 8.69 | -- | -- | 0.708 | -- | -- | 0.0711 | -- | 22.2 | 1041 | -- | -- |
| 114.67 | 0.5 | 8.64 | -- | -- | -- | -- | -- | 0.285 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 59.55 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 4 | 60.10 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 9 |
| 47 | 60.86 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 3 |
| 52 | 60.89 | temperature | 25 | 1440 | < th | dose dependent | sin | 12 | NA |
| 56 | 60.93 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 5 |
| 61 | 60.98 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 3 |
| 64 | 61.01 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 3 |
| 74 | 61.06 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 80 | 61.08 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 3 |
| 87 | 61.14 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 11 |
| 101 | 61.18 | temperature | 15 | 1440 | > th | dose dependent | rect. | 20 | 10 |
| 119 | 61.24 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 11 |
| 121 | 61.24 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 7 |
| 186 | 61.41 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 317 | 61.84 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 332 | 61.90 | temperature | 25 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 336 | 61.91 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 411 | 62.22 | temperature | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 472 | 62.41 | temperature | 20 | 1440 | < th | dose independent | sin | 11 | NA |
| 528 | 62.61 | temperature | 10 | 1440 | > th | dose dependent | sin | 11 | NA |
| 706 | 63.11 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 19 |
| 760 | 63.30 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 19 |
| 771 | 63.32 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 785 | 63.36 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 6 |
| 829 | 63.49 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 853 | 63.57 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 6 |
| 883 | 63.65 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 907 | 63.69 | temperature | 25 | 1440 | < th | dose dependent | rect. | 23 | 23 |
| 911 | 63.70 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 23 |