BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0359700 Os03g0359700|AK060778
(336 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0359700 Armadillo-like helical domain containing protein 689 0.0
Os07g0647100 Armadillo-like helical domain containing protein 559 e-159
Os07g0585100 Armadillo-like helical domain containing protein 276 2e-74
Os03g0172200 Armadillo-like helical domain containing protein 216 3e-56
>Os03g0359700 Armadillo-like helical domain containing protein
Length = 336
Score = 689 bits (1777), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/336 (100%), Positives = 336/336 (100%)
Query: 1 MSFFFRMASRLRPSTPEEVVRSIKDSFQALHTKNGARALEEVEKNLSSLRQMLSGDGEAE 60
MSFFFRMASRLRPSTPEEVVRSIKDSFQALHTKNGARALEEVEKNLSSLRQMLSGDGEAE
Sbjct: 1 MSFFFRMASRLRPSTPEEVVRSIKDSFQALHTKNGARALEEVEKNLSSLRQMLSGDGEAE 60
Query: 61 PNQEQVLQITLEICKEDVLSLFVQNLPSLGWGVRKDLVHCWCILLRQKFDESYCCVKYIE 120
PNQEQVLQITLEICKEDVLSLFVQNLPSLGWGVRKDLVHCWCILLRQKFDESYCCVKYIE
Sbjct: 61 PNQEQVLQITLEICKEDVLSLFVQNLPSLGWGVRKDLVHCWCILLRQKFDESYCCVKYIE 120
Query: 121 NHLELLDFLVGCYKNLDVALNCGNMLRECIKYPTLTKYILDSSSFELFFEYVELPNFDIA 180
NHLELLDFLVGCYKNLDVALNCGNMLRECIKYPTLTKYILDSSSFELFFEYVELPNFDIA
Sbjct: 121 NHLELLDFLVGCYKNLDVALNCGNMLRECIKYPTLTKYILDSSSFELFFEYVELPNFDIA 180
Query: 181 SDALNTFKDLLTKHETVVAEFLSSHYEQFFELYTRLLTSPNYVTRRQSVKFLSEFLLEAP 240
SDALNTFKDLLTKHETVVAEFLSSHYEQFFELYTRLLTSPNYVTRRQSVKFLSEFLLEAP
Sbjct: 181 SDALNTFKDLLTKHETVVAEFLSSHYEQFFELYTRLLTSPNYVTRRQSVKFLSEFLLEAP 240
Query: 241 NARIMKRYITEVRFLNIMITLLKDSSKNIRICAFHVFKVFVANPNKPRSIIEALIENRRE 300
NARIMKRYITEVRFLNIMITLLKDSSKNIRICAFHVFKVFVANPNKPRSIIEALIENRRE
Sbjct: 241 NARIMKRYITEVRFLNIMITLLKDSSKNIRICAFHVFKVFVANPNKPRSIIEALIENRRE 300
Query: 301 LLKLLQNLPTSKGEDELDEERNLIIQGIQKLACSSA 336
LLKLLQNLPTSKGEDELDEERNLIIQGIQKLACSSA
Sbjct: 301 LLKLLQNLPTSKGEDELDEERNLIIQGIQKLACSSA 336
>Os07g0647100 Armadillo-like helical domain containing protein
Length = 337
Score = 559 bits (1440), Expect = e-159, Method: Compositional matrix adjust.
Identities = 272/337 (80%), Positives = 300/337 (89%), Gaps = 1/337 (0%)
Query: 1 MSFFFRMASRLRPSTPEEVVRSIKDSFQALHTKNGARALEEVEKNLSSLRQMLSGDGEAE 60
MSFFFR ASR +P+E+VRSIK+S AL T+ GA+ALE+VEKN+S+LRQ LSGDGE E
Sbjct: 1 MSFFFRAASRPARPSPQELVRSIKESLLALDTRTGAKALEDVEKNVSTLRQTLSGDGEVE 60
Query: 61 PNQEQVLQITLEICKEDVLSLFVQNLPSLGWGVRKDLVHCWCILLRQKFDESYCCVKYIE 120
PNQEQVLQI LEICKEDVLSLFVQN+PSLGW RKDL HCW ILLRQK DE+YCCV+YIE
Sbjct: 61 PNQEQVLQIALEICKEDVLSLFVQNMPSLGWEGRKDLAHCWSILLRQKVDEAYCCVQYIE 120
Query: 121 NHLELLDFLVGCYKNLDVALNCGNMLRECIKYPTLTKYILDSSSFELFFEYVELPNFDIA 180
NH +LLDFLV CYKNL+VALNCGNMLRECIKYPTL KYIL+SSSFELFF+YVEL NFDIA
Sbjct: 121 NHFDLLDFLVVCYKNLEVALNCGNMLRECIKYPTLAKYILESSSFELFFQYVELSNFDIA 180
Query: 181 SDALNTFKDLLTKHETVVAEFLSSHYEQFFELYTRLLTSPNYVTRRQSVKFLSEFLLEAP 240
SDALNTFKDLLTKHE V+EFL SHYEQFFELYTRLLTS NYVTRRQSVKFLSEFLLEAP
Sbjct: 181 SDALNTFKDLLTKHEAAVSEFLCSHYEQFFELYTRLLTSTNYVTRRQSVKFLSEFLLEAP 240
Query: 241 NARIMKRYITEVRFLNIMITLLKDSSKNIRICAFHVFKVFVANPNKPRSIIEALIENRRE 300
NA+IMKRYI EV +LNIMI LLKD+SKNIRICAFH+FKVFVANPNKPR II+ L++N RE
Sbjct: 241 NAQIMKRYIVEVSYLNIMIGLLKDTSKNIRICAFHIFKVFVANPNKPRDIIQVLVDNHRE 300
Query: 301 LLKLLQNLPTSKGEDE-LDEERNLIIQGIQKLACSSA 336
LLKLL NLPTSKGEDE L+EER+LII+ I+KL SS
Sbjct: 301 LLKLLGNLPTSKGEDEQLEEERDLIIKEIEKLVHSSV 337
>Os07g0585100 Armadillo-like helical domain containing protein
Length = 336
Score = 276 bits (706), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 137/329 (41%), Positives = 211/329 (64%), Gaps = 9/329 (2%)
Query: 12 RPSTPEEVVRSIKDSFQALHTKNGARA--------LEEVEKNLSSLRQMLSGDGEAEPNQ 63
+P TP +VVR ++ L +G+R + E+ KN+ L+ +L G+GE+EP
Sbjct: 8 KPRTPADVVRQTRELLIFLDLHSGSRGGDAKREEKMAELSKNIRELKSILYGNGESEPVT 67
Query: 64 EQVLQITLEICKEDVLSLFVQNLPSLGWGVRKDLVHCWCILLRQKFDESYCCVKYIENHL 123
E +Q+T E +E+ L L + LP L RKD L RQ+ +Y+E +
Sbjct: 68 EACVQLTQEFFRENTLRLLIICLPKLNLETRKDATQVVANLQRQQVSSKIVASEYLEANK 127
Query: 124 ELLDFLVGCYKNLDVALNCGNMLRECIKYPTLTKYILDSSSFELFFEYVELPNFDIASDA 183
+LLD L+ Y+N+D+AL+ G+MLRECI++ ++ +Y+L+S + FF+Y++LPNFDIASDA
Sbjct: 128 DLLDTLISGYENMDIALHYGSMLRECIRHQSIARYVLESDHMKKFFDYIQLPNFDIASDA 187
Query: 184 LNTFKDLLTKHETVVAEFLSSHYEQFF-ELYTRLLTSPNYVTRRQSVKFLSEFLLEAPNA 242
TFK+LLT+H+ VAEFLS +Y+ FF E TRLL+S NY+T+RQ++KFL + LL+ N+
Sbjct: 188 SATFKELLTRHKATVAEFLSKNYDWFFSEFNTRLLSSTNYITKRQAIKFLGDMLLDRSNS 247
Query: 243 RIMKRYITEVRFLNIMITLLKDSSKNIRICAFHVFKVFVANPNKPRSIIEALIENRRELL 302
+M RY++ L I++ LL+DSSKNI+I AFHVFK+F AN NKP ++ L+ NR +LL
Sbjct: 248 TVMMRYVSSKDNLMILMNLLRDSSKNIQIEAFHVFKLFAANKNKPTEVVNILVTNRSKLL 307
Query: 303 KLLQNLPTSKGEDELDEERNLIIQGIQKL 331
+ K +++ + ++ +I+ I L
Sbjct: 308 RFFAGFKIDKEDEQFEADKEQVIKEISAL 336
>Os03g0172200 Armadillo-like helical domain containing protein
Length = 358
Score = 216 bits (549), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 114/335 (34%), Positives = 193/335 (57%), Gaps = 13/335 (3%)
Query: 10 RLRPSTPEEVVRSIKDSFQALHTKNGA----------RALEEVEKNLSSLRQMLSGDGEA 59
R + P EVVR ++ L + A + ++ K++ ++ +L G+GEA
Sbjct: 24 RSKARGPVEVVRHARELLAFLAENHDACGDKRDVKREHKMVDLAKSIGEMKSILYGNGEA 83
Query: 60 EPNQEQVLQITLEICKEDV--LSLFVQNLPSLGWGVRKDLVHCWCILLRQKFDESYCCVK 117
+P E Q+T E KE+ L L V LP + +KD+ LLRQK D
Sbjct: 84 DPVDEACSQLTKEFFKENTNSLHLLVVCLPYMDLETQKDVTQVTANLLRQKVDYRMVASD 143
Query: 118 YIENHLELLDFLVGCYKNLDVALNCGNMLRECIKYPTLTKYILDSSSFELFFEYVELPNF 177
Y+E + +LLD L+ Y N+D+A++ +LR+CI++ +Y+L+S + FF+Y++ P+F
Sbjct: 144 YLEENQDLLDVLMSGYDNMDIAIHYSAILRDCIRHQVAARYVLESQHMKKFFDYIQYPDF 203
Query: 178 DIASDALNTFKDLLTKHETVVAEFLSSHYEQFF-ELYTRLLTSPNYVTRRQSVKFLSEFL 236
+IASDA TFK+LLT+H + AEF S++Y+ FF E ++LL+S NY+ RRQ+ + L + L
Sbjct: 204 NIASDAFKTFKELLTRHRSSAAEFFSNNYDWFFPEFNSKLLSSSNYIIRRQATQLLGDIL 263
Query: 237 LEAPNARIMKRYITEVRFLNIMITLLKDSSKNIRICAFHVFKVFVANPNKPRSIIEALIE 296
L+ N M RY++ L I++ LL++ S+ I++ AF VFK+F NP KP I+ L+
Sbjct: 264 LDKSNTTAMVRYVSSKDNLIILMNLLREQSRAIQVEAFRVFKLFTCNPKKPPEIVGILVT 323
Query: 297 NRRELLKLLQNLPTSKGEDELDEERNLIIQGIQKL 331
N+ ++L+ L + K + + + ++ ++ I +
Sbjct: 324 NKSKILRFLADFTIEKEDQQFEADKAQVVTEISAM 358
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.137 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,314,335
Number of extensions: 405154
Number of successful extensions: 968
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 963
Number of HSP's successfully gapped: 4
Length of query: 336
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 235
Effective length of database: 11,762,187
Effective search space: 2764113945
Effective search space used: 2764113945
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 156 (64.7 bits)