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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0172200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Armadillo-like helical domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.32 (0.0351) R2 : 0.421
β1 : -0.0106 (0.128) R2dD : 3.25e-05 R2D : -0.00929
β2 : -- (--) R2dC : -- R2C : --
β3 : -2.47 (0.164) R2dE : 0.446 R2E : -0.059
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -11.6 (0.73) R2dD*E : 0.479 R2D*E : -0.0223
γ1 : 0.0209 (0.0758) R2dN8 : 8.19e-05 R2N8 : -0.0116
σ : 0.639
deviance : 188.47
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 6.778
memory length : 4321
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 18.4
open length of G : 4.07

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
185.45 0.64 3.32 -0.0166 0.24 -2.48 0.116 -11.6 0.0219 14.3 6.703 4320 18.4 4.04
235.07 0.714 3.32 -0.411 0.261 -1.59 -0.0647 -- 0.0226 14.3 9.4 4319 18.6 4.07
185.44 0.634 3.32 -0.0109 0.244 -2.49 -- -11.6 0.0244 14.2 6.786 4321 18.4 4.07
234.71 0.714 3.32 -0.489 0.251 -1.66 -- -- 0.0139 14.2 9.443 4319 18.6 3.97
188.47 0.639 3.32 -0.0106 -- -2.47 -- -11.6 0.0209 -- 6.778 4321 18.4 4.07
317.1 0.835 3.26 -0.322 0.293 -- 0.0867 -- -0.0843 13.7 -- -- -- --
317.13 0.834 3.26 -0.319 0.293 -- -- -- -0.0839 13.6 -- -- -- --
239.08 0.72 3.32 -0.505 -- -1.61 -- -- 0.0122 -- 9.4 4319 18.7 3.95
240.94 0.723 3.32 -- 0.259 -1.61 -- -- 0.0153 14.2 9.4 4319 18.7 3.98
322.37 0.839 3.26 -0.331 -- -- -- -- -0.0904 -- -- -- -- --
319.82 0.837 3.25 -- 0.299 -- -- -- -0.0483 13.7 -- -- -- --
245.61 0.73 3.31 -- -- -1.56 -- -- -0.00434 -- 9.409 4319 18.7 3.06
325.27 0.842 3.25 -- -- -- -- -- -0.0536 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 193.18 wind 5 4320 > th dose dependent rect. 19 4
3 193.58 wind 7 4320 < th dose independent rect. 18 4
11 195.56 wind 7 4320 < th dose independent rect. 18 9
14 196.46 wind 7 4320 > th dose independent rect. 18 4
28 198.97 wind 7 4320 > th dose independent rect. 18 9
32 199.48 wind 7 4320 > th dose dependent rect. 18 9
35 199.66 wind 5 4320 > th dose independent rect. 21 1
46 200.97 wind 9 4320 > th dose dependent rect. 20 8
58 201.21 wind 9 4320 > th dose dependent rect. 20 6
69 201.81 humidity 90 1440 < th dose dependent rect. 3 1
85 202.34 wind 9 4320 > th dose independent rect. 20 8
162 209.85 atmosphere 995 14400 < th dose independent rect. 16 1
167 209.92 atmosphere 995 14400 < th dose dependent rect. 16 1
187 210.30 atmosphere 995 14400 > th dose independent rect. 16 5
188 210.44 atmosphere 995 14400 > th dose independent rect. 16 2
198 210.95 humidity 80 1440 < th dose independent rect. 22 1
208 211.88 atmosphere 995 14400 > th dose independent rect. 10 11
238 212.03 atmosphere 995 14400 > th dose independent rect. 10 9
243 212.15 humidity 90 1440 < th dose dependent rect. 23 8
246 212.19 atmosphere 995 14400 > th dose independent rect. 13 8
342 214.09 humidity 90 1440 < th dose dependent rect. 2 5
460 218.98 temperature 20 1440 > th dose independent rect. 18 1
493 219.74 humidity 90 1440 < th dose dependent rect. 5 1
514 220.35 humidity 70 1440 > th dose dependent rect. 3 1
530 220.58 atmosphere 995 14400 > th dose independent sin 22 NA
535 220.68 atmosphere 995 14400 < th dose independent sin 22 NA
567 221.37 atmosphere 995 14400 < th dose dependent sin 23 NA
571 221.45 temperature 20 720 < th dose independent rect. 18 1
588 221.84 atmosphere 995 14400 > th dose independent sin 3 NA
707 223.18 humidity 80 1440 < th dose independent rect. 21 5
713 223.25 radiation 1 14400 < th dose dependent rect. 21 5
719 223.35 humidity 70 1440 > th dose dependent rect. 1 5
783 223.68 humidity 80 1440 > th dose independent rect. 22 1
887 224.10 atmosphere 995 14400 > th dose independent no NA NA
890 224.10 atmosphere 995 14400 > th dose independent rect. 10 23
891 224.10 atmosphere 995 14400 > th dose independent rect. 12 23
892 224.10 atmosphere 995 14400 > th dose independent rect. 14 23
958 224.42 wind 7 1440 > th dose independent rect. 8 1
963 224.44 radiation 1 14400 < th dose dependent rect. 23 1
966 224.50 radiation 1 14400 < th dose dependent rect. 19 7
989 224.61 atmosphere 995 14400 > th dose independent rect. 14 21