BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0172200 Os03g0172200|AK069130
(358 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G47540.1 | chr5:19283265-19285328 REVERSE LENGTH=344 446 e-125
AT4G17270.1 | chr4:9676406-9678568 FORWARD LENGTH=344 416 e-116
AT2G03410.1 | chr2:1033907-1034953 FORWARD LENGTH=349 379 e-105
AT5G18940.1 | chr5:6325972-6328097 FORWARD LENGTH=346 217 1e-56
>AT5G47540.1 | chr5:19283265-19285328 REVERSE LENGTH=344
Length = 343
Score = 446 bits (1146), Expect = e-125, Method: Compositional matrix adjust.
Identities = 210/338 (62%), Positives = 272/338 (80%), Gaps = 3/338 (0%)
Query: 21 SLFRSKARGPVEVVRHARELLAFLAENHDACGDKRDVKREHKMVDLAKSIGEMKSILYGN 80
LF+SK R P ++VR R+LL F ++ + D RD KR+ KM +L+++I +MKSILYGN
Sbjct: 3 GLFKSKPRTPADLVRQTRDLLLF-SDRSTSLPDLRDSKRDEKMAELSRNIRDMKSILYGN 61
Query: 81 GEADPVDEACSQLTKEFFKENTNSLHLLVVCLPYMDLETQKDVTQVTANLLRQKVDYRMV 140
EA+PV EAC+QLT+EFFKE+T L LL+ CLP ++LET+KD TQV ANL RQ+V+ R++
Sbjct: 62 SEAEPVAEACAQLTQEFFKEDT--LRLLITCLPKLNLETRKDATQVVANLQRQQVNSRLI 119
Query: 141 ASDYLEENQDLLDVLMSGYDNMDIAIHYSAILRDCIRHQVAARYVLESQHMKKFFDYIQY 200
ASDYLE N DL+DVL+ G++N D+A+HY A+ R+CIRHQ+ A+YVLES H+KKFFDYIQ
Sbjct: 120 ASDYLEANIDLMDVLIEGFENTDMALHYGAMFRECIRHQIVAKYVLESDHVKKFFDYIQL 179
Query: 201 PDFNIASDAFKTFKELLTRHRSSAAEFFSNNYDWFFPEFNSKLLSSSNYIIRRQATQLLG 260
P+F+IA+DA TFKELLTRH+S+ AEF + N DWFF ++NSKLL SSNYI RRQA +LLG
Sbjct: 180 PNFDIAADAAATFKELLTRHKSTVAEFLTKNEDWFFADYNSKLLESSNYITRRQAIKLLG 239
Query: 261 DILLDKSNTTAMVRYVSSKDNLIILMNLLREQSRAIQVEAFRVFKLFTCNPKKPPEIVGI 320
DILLD+SN+ M +YVSS+DNL ILMNLLRE S++IQ+EAF VFKLF N KP +IV I
Sbjct: 240 DILLDRSNSAVMTKYVSSRDNLRILMNLLRESSKSIQIEAFHVFKLFAANQNKPADIVNI 299
Query: 321 LVTNKSKILRFLADFTIEKEDQQFEADKAQVVTEISAM 358
LV N+SK+LR LAD +KED++FEADK+QV+ EI+A+
Sbjct: 300 LVANRSKLLRLLADLKPDKEDERFEADKSQVLREIAAL 337
>AT4G17270.1 | chr4:9676406-9678568 FORWARD LENGTH=344
Length = 343
Score = 416 bits (1069), Expect = e-116, Method: Compositional matrix adjust.
Identities = 199/338 (58%), Positives = 262/338 (77%), Gaps = 3/338 (0%)
Query: 21 SLFRSKARGPVEVVRHARELLAFLAENHDACGDKRDVKREHKMVDLAKSIGEMKSILYGN 80
LF+SK R P ++VR R+LL + A+ ++ D R+ KRE KMV+L+KSI ++K ILYGN
Sbjct: 3 GLFKSKPRTPADIVRQTRDLLLY-ADRSNSFPDLRESKREEKMVELSKSIRDLKLILYGN 61
Query: 81 GEADPVDEACSQLTKEFFKENTNSLHLLVVCLPYMDLETQKDVTQVTANLLRQKVDYRMV 140
EA+PV EAC+QLT+EFFK +T L L+ LP ++LE +KD TQV ANL RQ+V+ R++
Sbjct: 62 SEAEPVAEACAQLTQEFFKADT--LRRLLTSLPNLNLEARKDATQVVANLQRQQVNSRLI 119
Query: 141 ASDYLEENQDLLDVLMSGYDNMDIAIHYSAILRDCIRHQVAARYVLESQHMKKFFDYIQY 200
A+DYLE N DL+D L+ G++N D+A+HY + R+CIRHQ+ A+YVL+S+H+KKFF YIQ
Sbjct: 120 AADYLESNIDLMDFLVDGFENTDMALHYGTMFRECIRHQIVAKYVLDSEHVKKFFYYIQL 179
Query: 201 PDFNIASDAFKTFKELLTRHRSSAAEFFSNNYDWFFPEFNSKLLSSSNYIIRRQATQLLG 260
P+F+IA+DA TFKELLTRH+S+ AEF N DWFF ++NSKLL S+NYI RRQA +LLG
Sbjct: 180 PNFDIAADAAATFKELLTRHKSTVAEFLIKNEDWFFADYNSKLLESTNYITRRQAIKLLG 239
Query: 261 DILLDKSNTTAMVRYVSSKDNLIILMNLLREQSRAIQVEAFRVFKLFTCNPKKPPEIVGI 320
DILLD+SN+ M +YVSS DNL ILMNLLRE S+ IQ+EAF VFKLF N KP +I I
Sbjct: 240 DILLDRSNSAVMTKYVSSMDNLRILMNLLRESSKTIQIEAFHVFKLFVANQNKPSDIANI 299
Query: 321 LVTNKSKILRFLADFTIEKEDQQFEADKAQVVTEISAM 358
LV N++K+LR LAD +KED++F+ADKAQVV EI+ +
Sbjct: 300 LVANRNKLLRLLADIKPDKEDERFDADKAQVVREIANL 337
>AT2G03410.1 | chr2:1033907-1034953 FORWARD LENGTH=349
Length = 348
Score = 379 bits (972), Expect = e-105, Method: Compositional matrix adjust.
Identities = 179/339 (52%), Positives = 258/339 (76%), Gaps = 4/339 (1%)
Query: 21 SLFRSKARGPVEVVRHARELLAFLAENHDACGDKRDVKREHKMVDLAKSIGEMKSILYGN 80
LF++K+R P E+VR R+L+A LAE+ + D R+ KR +L ++I ++KSILYGN
Sbjct: 3 GLFKNKSRLPGEIVRQTRDLIA-LAESEEEETDARNSKRLGICAELCRNIRDLKSILYGN 61
Query: 81 GEADPVDEACSQLTKEFFKENTNSLHLLVVCLPYMDLETQKDVTQVTANLLRQKVDYRMV 140
GEA+PV EAC LT+EFF+ +T L L+ +P +DLE +KD TQ+ ANL +Q+V++R+V
Sbjct: 62 GEAEPVPEACLLLTQEFFRADT--LRPLIKSIPKLDLEARKDATQIVANLQKQQVEFRLV 119
Query: 141 ASDYLEENQDLLDVLMSGYD-NMDIAIHYSAILRDCIRHQVAARYVLESQHMKKFFDYIQ 199
AS+YLE N D++D L+ G D + ++A+HY+ +L++C+RHQV A+Y+LES++++KFFDY+Q
Sbjct: 120 ASEYLESNLDVIDSLVEGIDHDHELALHYTGMLKECVRHQVVAKYILESKNLEKFFDYVQ 179
Query: 200 YPDFNIASDAFKTFKELLTRHRSSAAEFFSNNYDWFFPEFNSKLLSSSNYIIRRQATQLL 259
P F++A+DA K F+ELLTRH+S+ AE+ + NY+WFF E+N+KLL +Y +RQA++LL
Sbjct: 180 LPYFDVATDASKIFRELLTRHKSTVAEYLAKNYEWFFAEYNTKLLEKGSYFTKRQASKLL 239
Query: 260 GDILLDKSNTTAMVRYVSSKDNLIILMNLLREQSRAIQVEAFRVFKLFTCNPKKPPEIVG 319
GD+L+D+SN+ MV+YVSS DNL I+MNLLRE ++ IQ+EAF +FKLF N KP +IV
Sbjct: 240 GDVLMDRSNSGVMVKYVSSLDNLRIMMNLLREPTKNIQLEAFHIFKLFVANENKPEDIVA 299
Query: 320 ILVTNKSKILRFLADFTIEKEDQQFEADKAQVVTEISAM 358
ILV N++KILR AD EKED FE DKA V+ EI+ +
Sbjct: 300 ILVANRTKILRLFADLKPEKEDVGFETDKALVMNEIATL 338
>AT5G18940.1 | chr5:6325972-6328097 FORWARD LENGTH=346
Length = 345
Score = 217 bits (552), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 127/331 (38%), Positives = 196/331 (59%), Gaps = 18/331 (5%)
Query: 21 SLFR-SKARGPVEVVRHARELLAFLAENHDACGDKRDVKR----EHKMVDLAKSIGEMKS 75
S F+ S+ + P EVV+ R+ L L D + V E + ++ K+ ++
Sbjct: 4 SFFKPSRPKTPQEVVKAIRDSLMAL--------DTKTVVEVKALEKALEEVEKNFSSLRG 55
Query: 76 ILYGNGEADPVDEACSQLTKEFFKENTNSLHLLVVCLPYMDLETQKDVTQVTANLLRQKV 135
IL G+GE +P + QL EF KE+ SL ++ L + ET+KD+ + LL+QKV
Sbjct: 56 ILSGDGETEPNADQAVQLALEFCKEDVVSL--VIHKLHILGWETRKDLLHCWSILLKQKV 113
Query: 136 DYRMVASDYLEENQDLLDVLMSGYDNMDIAIHYSAILRDCIRHQVAARYVLESQHMKKFF 195
Y EE+ +LLD L+ YDN +IA+H ++LR+CI+ A+Y+LES + FF
Sbjct: 114 GDTYCCVQYFEEHFELLDSLVVCYDNKEIALHCGSMLRECIKFPSLAKYILESACFELFF 173
Query: 196 DYIQYPDFNIASDAFKTFKELLTRHRSSAAEFFSNNYDWFFPEFNSKLLSSSNYIIRRQA 255
+++ P+F++ASDAF TFK+LLT+H S +EF +++Y FF + +LL+SSNY+ RRQ+
Sbjct: 174 KFVELPNFDVASDAFSTFKDLLTKHDSVVSEFLTSHYTEFFDVYE-RLLTSSNYVTRRQS 232
Query: 256 TQLLGDILLDKSNTTAMVRYVSSKDNLIILMNLLREQSRAIQVEAFRVFKLFTCNPKKPP 315
+LL D LL+ N+ M +++ L ++M LL++ S+ IQ+ AF +FK+F NP KP
Sbjct: 233 LKLLSDFLLEPPNSHIMKKFILEVRYLKVIMTLLKDSSKNIQISAFHIFKIFVANPNKPQ 292
Query: 316 EIVGILVTNKSKILRFLADFTIEK--EDQQF 344
E+ IL N K+L L D + K ED QF
Sbjct: 293 EVKIILARNHEKLLELLHDLSPGKGSEDDQF 323
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.135 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,944,118
Number of extensions: 270567
Number of successful extensions: 764
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 752
Number of HSP's successfully gapped: 4
Length of query: 358
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 258
Effective length of database: 8,364,969
Effective search space: 2158162002
Effective search space used: 2158162002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 112 (47.8 bits)