BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0172200 Os03g0172200|AK069130
(358 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0172200 Armadillo-like helical domain containing protein 721 0.0
Os07g0585100 Armadillo-like helical domain containing protein 473 e-134
Os07g0647100 Armadillo-like helical domain containing protein 221 6e-58
Os03g0359700 Armadillo-like helical domain containing protein 216 3e-56
>Os03g0172200 Armadillo-like helical domain containing protein
Length = 358
Score = 721 bits (1860), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/358 (97%), Positives = 348/358 (97%)
Query: 1 MAGCLWPCVTXXXXXXXXXXSLFRSKARGPVEVVRHARELLAFLAENHDACGDKRDVKRE 60
MAGCLWPCVT SLFRSKARGPVEVVRHARELLAFLAENHDACGDKRDVKRE
Sbjct: 1 MAGCLWPCVTGGGAAADGAGSLFRSKARGPVEVVRHARELLAFLAENHDACGDKRDVKRE 60
Query: 61 HKMVDLAKSIGEMKSILYGNGEADPVDEACSQLTKEFFKENTNSLHLLVVCLPYMDLETQ 120
HKMVDLAKSIGEMKSILYGNGEADPVDEACSQLTKEFFKENTNSLHLLVVCLPYMDLETQ
Sbjct: 61 HKMVDLAKSIGEMKSILYGNGEADPVDEACSQLTKEFFKENTNSLHLLVVCLPYMDLETQ 120
Query: 121 KDVTQVTANLLRQKVDYRMVASDYLEENQDLLDVLMSGYDNMDIAIHYSAILRDCIRHQV 180
KDVTQVTANLLRQKVDYRMVASDYLEENQDLLDVLMSGYDNMDIAIHYSAILRDCIRHQV
Sbjct: 121 KDVTQVTANLLRQKVDYRMVASDYLEENQDLLDVLMSGYDNMDIAIHYSAILRDCIRHQV 180
Query: 181 AARYVLESQHMKKFFDYIQYPDFNIASDAFKTFKELLTRHRSSAAEFFSNNYDWFFPEFN 240
AARYVLESQHMKKFFDYIQYPDFNIASDAFKTFKELLTRHRSSAAEFFSNNYDWFFPEFN
Sbjct: 181 AARYVLESQHMKKFFDYIQYPDFNIASDAFKTFKELLTRHRSSAAEFFSNNYDWFFPEFN 240
Query: 241 SKLLSSSNYIIRRQATQLLGDILLDKSNTTAMVRYVSSKDNLIILMNLLREQSRAIQVEA 300
SKLLSSSNYIIRRQATQLLGDILLDKSNTTAMVRYVSSKDNLIILMNLLREQSRAIQVEA
Sbjct: 241 SKLLSSSNYIIRRQATQLLGDILLDKSNTTAMVRYVSSKDNLIILMNLLREQSRAIQVEA 300
Query: 301 FRVFKLFTCNPKKPPEIVGILVTNKSKILRFLADFTIEKEDQQFEADKAQVVTEISAM 358
FRVFKLFTCNPKKPPEIVGILVTNKSKILRFLADFTIEKEDQQFEADKAQVVTEISAM
Sbjct: 301 FRVFKLFTCNPKKPPEIVGILVTNKSKILRFLADFTIEKEDQQFEADKAQVVTEISAM 358
>Os07g0585100 Armadillo-like helical domain containing protein
Length = 336
Score = 473 bits (1217), Expect = e-134, Method: Compositional matrix adjust.
Identities = 224/338 (66%), Positives = 277/338 (81%), Gaps = 4/338 (1%)
Query: 21 SLFRSKARGPVEVVRHARELLAFLAENHDACGDKRDVKREHKMVDLAKSIGEMKSILYGN 80
LF+SK R P +VVR RELL FL + + G D KRE KM +L+K+I E+KSILYGN
Sbjct: 3 GLFKSKPRTPADVVRQTRELLIFLDLHSGSRGG--DAKREEKMAELSKNIRELKSILYGN 60
Query: 81 GEADPVDEACSQLTKEFFKENTNSLHLLVVCLPYMDLETQKDVTQVTANLLRQKVDYRMV 140
GE++PV EAC QLT+EFF+ENT L LL++CLP ++LET+KD TQV ANL RQ+V ++V
Sbjct: 61 GESEPVTEACVQLTQEFFRENT--LRLLIICLPKLNLETRKDATQVVANLQRQQVSSKIV 118
Query: 141 ASDYLEENQDLLDVLMSGYDNMDIAIHYSAILRDCIRHQVAARYVLESQHMKKFFDYIQY 200
AS+YLE N+DLLD L+SGY+NMDIA+HY ++LR+CIRHQ ARYVLES HMKKFFDYIQ
Sbjct: 119 ASEYLEANKDLLDTLISGYENMDIALHYGSMLRECIRHQSIARYVLESDHMKKFFDYIQL 178
Query: 201 PDFNIASDAFKTFKELLTRHRSSAAEFFSNNYDWFFPEFNSKLLSSSNYIIRRQATQLLG 260
P+F+IASDA TFKELLTRH+++ AEF S NYDWFF EFN++LLSS+NYI +RQA + LG
Sbjct: 179 PNFDIASDASATFKELLTRHKATVAEFLSKNYDWFFSEFNTRLLSSTNYITKRQAIKFLG 238
Query: 261 DILLDKSNTTAMVRYVSSKDNLIILMNLLREQSRAIQVEAFRVFKLFTCNPKKPPEIVGI 320
D+LLD+SN+T M+RYVSSKDNL+ILMNLLR+ S+ IQ+EAF VFKLF N KP E+V I
Sbjct: 239 DMLLDRSNSTVMMRYVSSKDNLMILMNLLRDSSKNIQIEAFHVFKLFAANKNKPTEVVNI 298
Query: 321 LVTNKSKILRFLADFTIEKEDQQFEADKAQVVTEISAM 358
LVTN+SK+LRF A F I+KED+QFEADK QV+ EISA+
Sbjct: 299 LVTNRSKLLRFFAGFKIDKEDEQFEADKEQVIKEISAL 336
>Os07g0647100 Armadillo-like helical domain containing protein
Length = 337
Score = 221 bits (563), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 122/341 (35%), Positives = 201/341 (58%), Gaps = 18/341 (5%)
Query: 23 FRSKAR----GPVEVVRHARELLAFLAENHDACGDKRDVKREHKMVDLAKSIGEMKSILY 78
FR+ +R P E+VR +E L L D R + + D+ K++ ++ L
Sbjct: 5 FRAASRPARPSPQELVRSIKESLLAL--------DTRTGAK--ALEDVEKNVSTLRQTLS 54
Query: 79 GNGEADPVDEACSQLTKEFFKENTNSLHLLVVCLPYMDLETQKDVTQVTANLLRQKVDYR 138
G+GE +P E Q+ E KE+ L L V +P + E +KD+ + LLRQKVD
Sbjct: 55 GDGEVEPNQEQVLQIALEICKEDV--LSLFVQNMPSLGWEGRKDLAHCWSILLRQKVDEA 112
Query: 139 MVASDYLEENQDLLDVLMSGYDNMDIAIHYSAILRDCIRHQVAARYVLESQHMKKFFDYI 198
Y+E + DLLD L+ Y N+++A++ +LR+CI++ A+Y+LES + FF Y+
Sbjct: 113 YCCVQYIENHFDLLDFLVVCYKNLEVALNCGNMLRECIKYPTLAKYILESSSFELFFQYV 172
Query: 199 QYPDFNIASDAFKTFKELLTRHRSSAAEFFSNNYDWFFPEFNSKLLSSSNYIIRRQATQL 258
+ +F+IASDA TFK+LLT+H ++ +EF ++Y+ FF E ++LL+S+NY+ RRQ+ +
Sbjct: 173 ELSNFDIASDALNTFKDLLTKHEAAVSEFLCSHYEQFF-ELYTRLLTSTNYVTRRQSVKF 231
Query: 259 LGDILLDKSNTTAMVRYVSSKDNLIILMNLLREQSRAIQVEAFRVFKLFTCNPKKPPEIV 318
L + LL+ N M RY+ L I++ LL++ S+ I++ AF +FK+F NP KP +I+
Sbjct: 232 LSEFLLEAPNAQIMKRYIVEVSYLNIMIGLLKDTSKNIRICAFHIFKVFVANPNKPRDII 291
Query: 319 GILVTNKSKILRFLADFTIEK-EDQQFEADKAQVVTEISAM 358
+LV N ++L+ L + K ED+Q E ++ ++ EI +
Sbjct: 292 QVLVDNHRELLKLLGNLPTSKGEDEQLEEERDLIIKEIEKL 332
>Os03g0359700 Armadillo-like helical domain containing protein
Length = 336
Score = 216 bits (549), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 114/335 (34%), Positives = 193/335 (57%), Gaps = 13/335 (3%)
Query: 24 RSKARGPVEVVRHARELLAFLAENHDACGDKRDVKREHKMVDLAKSIGEMKSILYGNGEA 83
R + P EVVR ++ L + A + ++ K++ ++ +L G+GEA
Sbjct: 10 RLRPSTPEEVVRSIKDSFQALHTKNGA----------RALEEVEKNLSSLRQMLSGDGEA 59
Query: 84 DPVDEACSQLTKEFFKENTNSLHLLVVCLPYMDLETQKDVTQVTANLLRQKVDYRMVASD 143
+P E Q+T E KE+ L L V LP + +KD+ LLRQK D
Sbjct: 60 EPNQEQVLQITLEICKEDV--LSLFVQNLPSLGWGVRKDLVHCWCILLRQKFDESYCCVK 117
Query: 144 YLEENQDLLDVLMSGYDNMDIAIHYSAILRDCIRHQVAARYVLESQHMKKFFDYIQYPDF 203
Y+E + +LLD L+ Y N+D+A++ +LR+CI++ +Y+L+S + FF+Y++ P+F
Sbjct: 118 YIENHLELLDFLVGCYKNLDVALNCGNMLRECIKYPTLTKYILDSSSFELFFEYVELPNF 177
Query: 204 NIASDAFKTFKELLTRHRSSAAEFFSNNYDWFFPEFNSKLLSSSNYIIRRQATQLLGDIL 263
+IASDA TFK+LLT+H + AEF S++Y+ FF E ++LL+S NY+ RRQ+ + L + L
Sbjct: 178 DIASDALNTFKDLLTKHETVVAEFLSSHYEQFF-ELYTRLLTSPNYVTRRQSVKFLSEFL 236
Query: 264 LDKSNTTAMVRYVSSKDNLIILMNLLREQSRAIQVEAFRVFKLFTCNPKKPPEIVGILVT 323
L+ N M RY++ L I++ LL++ S+ I++ AF VFK+F NP KP I+ L+
Sbjct: 237 LEAPNARIMKRYITEVRFLNIMITLLKDSSKNIRICAFHVFKVFVANPNKPRSIIEALIE 296
Query: 324 NKSKILRFLADFTIEKEDQQFEADKAQVVTEISAM 358
N+ ++L+ L + K + + + ++ ++ I +
Sbjct: 297 NRRELLKLLQNLPTSKGEDELDEERNLIIQGIQKL 331
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.135 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,058,493
Number of extensions: 361963
Number of successful extensions: 834
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 826
Number of HSP's successfully gapped: 4
Length of query: 358
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 256
Effective length of database: 11,709,973
Effective search space: 2997753088
Effective search space used: 2997753088
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)