BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0359700 Os03g0359700|AK060778
(336 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G18940.1 | chr5:6325972-6328097 FORWARD LENGTH=346 421 e-118
AT4G17270.1 | chr4:9676406-9678568 FORWARD LENGTH=344 261 4e-70
AT5G47540.1 | chr5:19283265-19285328 REVERSE LENGTH=344 256 1e-68
AT2G03410.1 | chr2:1033907-1034953 FORWARD LENGTH=349 223 1e-58
>AT5G18940.1 | chr5:6325972-6328097 FORWARD LENGTH=346
Length = 345
Score = 421 bits (1081), Expect = e-118, Method: Compositional matrix adjust.
Identities = 200/322 (62%), Positives = 254/322 (78%), Gaps = 8/322 (2%)
Query: 1 MSFFFRMASRLRPSTPEEVVRSIKDSFQALHTKNGA------RALEEVEKNLSSLRQMLS 54
MSF F SR P TP+EVV++I+DS AL TK +ALEEVEKN SSLR +LS
Sbjct: 1 MSFSFFKPSR--PKTPQEVVKAIRDSLMALDTKTVVEVKALEKALEEVEKNFSSLRGILS 58
Query: 55 GDGEAEPNQEQVLQITLEICKEDVLSLFVQNLPSLGWGVRKDLVHCWCILLRQKFDESYC 114
GDGE EPN +Q +Q+ LE CKEDV+SL + L LGW RKDL+HCW ILL+QK ++YC
Sbjct: 59 GDGETEPNADQAVQLALEFCKEDVVSLVIHKLHILGWETRKDLLHCWSILLKQKVGDTYC 118
Query: 115 CVKYIENHLELLDFLVGCYKNLDVALNCGNMLRECIKYPTLTKYILDSSSFELFFEYVEL 174
CV+Y E H ELLD LV CY N ++AL+CG+MLRECIK+P+L KYIL+S+ FELFF++VEL
Sbjct: 119 CVQYFEEHFELLDSLVVCYDNKEIALHCGSMLRECIKFPSLAKYILESACFELFFKFVEL 178
Query: 175 PNFDIASDALNTFKDLLTKHETVVAEFLSSHYEQFFELYTRLLTSPNYVTRRQSVKFLSE 234
PNFD+ASDA +TFKDLLTKH++VV+EFL+SHY +FF++Y RLLTS NYVTRRQS+K LS+
Sbjct: 179 PNFDVASDAFSTFKDLLTKHDSVVSEFLTSHYTEFFDVYERLLTSSNYVTRRQSLKLLSD 238
Query: 235 FLLEAPNARIMKRYITEVRFLNIMITLLKDSSKNIRICAFHVFKVFVANPNKPRSIIEAL 294
FLLE PN+ IMK++I EVR+L +++TLLKDSSKNI+I AFH+FK+FVANPNKP+ + L
Sbjct: 239 FLLEPPNSHIMKKFILEVRYLKVIMTLLKDSSKNIQISAFHIFKIFVANPNKPQEVKIIL 298
Query: 295 IENRRELLKLLQNLPTSKGEDE 316
N +LL+LL +L KG ++
Sbjct: 299 ARNHEKLLELLHDLSPGKGSED 320
>AT4G17270.1 | chr4:9676406-9678568 FORWARD LENGTH=344
Length = 343
Score = 261 bits (667), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 133/330 (40%), Positives = 205/330 (62%), Gaps = 10/330 (3%)
Query: 12 RPSTPEEVVRSIKD---------SFQALHTKNGARALEEVEKNLSSLRQMLSGDGEAEPN 62
+P TP ++VR +D SF L + E+ K++ L+ +L G+ EAEP
Sbjct: 8 KPRTPADIVRQTRDLLLYADRSNSFPDLRESKREEKMVELSKSIRDLKLILYGNSEAEPV 67
Query: 63 QEQVLQITLEICKEDVLSLFVQNLPSLGWGVRKDLVHCWCILLRQKFDESYCCVKYIENH 122
E Q+T E K D L + +LP+L RKD L RQ+ + Y+E++
Sbjct: 68 AEACAQLTQEFFKADTLRRLLTSLPNLNLEARKDATQVVANLQRQQVNSRLIAADYLESN 127
Query: 123 LELLDFLVGCYKNLDVALNCGNMLRECIKYPTLTKYILDSSSFELFFEYVELPNFDIASD 182
++L+DFLV ++N D+AL+ G M RECI++ + KY+LDS + FF Y++LPNFDIA+D
Sbjct: 128 IDLMDFLVDGFENTDMALHYGTMFRECIRHQIVAKYVLDSEHVKKFFYYIQLPNFDIAAD 187
Query: 183 ALNTFKDLLTKHETVVAEFLSSHYEQFFELY-TRLLTSPNYVTRRQSVKFLSEFLLEAPN 241
A TFK+LLT+H++ VAEFL + + FF Y ++LL S NY+TRRQ++K L + LL+ N
Sbjct: 188 AAATFKELLTRHKSTVAEFLIKNEDWFFADYNSKLLESTNYITRRQAIKLLGDILLDRSN 247
Query: 242 ARIMKRYITEVRFLNIMITLLKDSSKNIRICAFHVFKVFVANPNKPRSIIEALIENRREL 301
+ +M +Y++ + L I++ LL++SSK I+I AFHVFK+FVAN NKP I L+ NR +L
Sbjct: 248 SAVMTKYVSSMDNLRILMNLLRESSKTIQIEAFHVFKLFVANQNKPSDIANILVANRNKL 307
Query: 302 LKLLQNLPTSKGEDELDEERNLIIQGIQKL 331
L+LL ++ K ++ D ++ +++ I L
Sbjct: 308 LRLLADIKPDKEDERFDADKAQVVREIANL 337
>AT5G47540.1 | chr5:19283265-19285328 REVERSE LENGTH=344
Length = 343
Score = 256 bits (655), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 129/330 (39%), Positives = 205/330 (62%), Gaps = 10/330 (3%)
Query: 12 RPSTPEEVVRSIKD---------SFQALHTKNGARALEEVEKNLSSLRQMLSGDGEAEPN 62
+P TP ++VR +D S L + E+ +N+ ++ +L G+ EAEP
Sbjct: 8 KPRTPADLVRQTRDLLLFSDRSTSLPDLRDSKRDEKMAELSRNIRDMKSILYGNSEAEPV 67
Query: 63 QEQVLQITLEICKEDVLSLFVQNLPSLGWGVRKDLVHCWCILLRQKFDESYCCVKYIENH 122
E Q+T E KED L L + LP L RKD L RQ+ + Y+E +
Sbjct: 68 AEACAQLTQEFFKEDTLRLLITCLPKLNLETRKDATQVVANLQRQQVNSRLIASDYLEAN 127
Query: 123 LELLDFLVGCYKNLDVALNCGNMLRECIKYPTLTKYILDSSSFELFFEYVELPNFDIASD 182
++L+D L+ ++N D+AL+ G M RECI++ + KY+L+S + FF+Y++LPNFDIA+D
Sbjct: 128 IDLMDVLIEGFENTDMALHYGAMFRECIRHQIVAKYVLESDHVKKFFDYIQLPNFDIAAD 187
Query: 183 ALNTFKDLLTKHETVVAEFLSSHYEQFFELY-TRLLTSPNYVTRRQSVKFLSEFLLEAPN 241
A TFK+LLT+H++ VAEFL+ + + FF Y ++LL S NY+TRRQ++K L + LL+ N
Sbjct: 188 AAATFKELLTRHKSTVAEFLTKNEDWFFADYNSKLLESSNYITRRQAIKLLGDILLDRSN 247
Query: 242 ARIMKRYITEVRFLNIMITLLKDSSKNIRICAFHVFKVFVANPNKPRSIIEALIENRREL 301
+ +M +Y++ L I++ LL++SSK+I+I AFHVFK+F AN NKP I+ L+ NR +L
Sbjct: 248 SAVMTKYVSSRDNLRILMNLLRESSKSIQIEAFHVFKLFAANQNKPADIVNILVANRSKL 307
Query: 302 LKLLQNLPTSKGEDELDEERNLIIQGIQKL 331
L+LL +L K ++ + +++ +++ I L
Sbjct: 308 LRLLADLKPDKEDERFEADKSQVLREIAAL 337
>AT2G03410.1 | chr2:1033907-1034953 FORWARD LENGTH=349
Length = 348
Score = 223 bits (568), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 123/343 (35%), Positives = 207/343 (60%), Gaps = 15/343 (4%)
Query: 1 MSFFFRMASRLRPSTPEEVVRSIKDSF-------QALHTKNGAR--ALEEVEKNLSSLRQ 51
M F+ SRL P E+VR +D + +N R E+ +N+ L+
Sbjct: 1 MKGLFKNKSRL----PGEIVRQTRDLIALAESEEEETDARNSKRLGICAELCRNIRDLKS 56
Query: 52 MLSGDGEAEPNQEQVLQITLEICKEDVLSLFVQNLPSLGWGVRKDLVHCWCILLRQKFDE 111
+L G+GEAEP E L +T E + D L ++++P L RKD L +Q+ +
Sbjct: 57 ILYGNGEAEPVPEACLLLTQEFFRADTLRPLIKSIPKLDLEARKDATQIVANLQKQQVEF 116
Query: 112 SYCCVKYIENHLELLDFLV-GCYKNLDVALNCGNMLRECIKYPTLTKYILDSSSFELFFE 170
+Y+E++L+++D LV G + ++AL+ ML+EC+++ + KYIL+S + E FF+
Sbjct: 117 RLVASEYLESNLDVIDSLVEGIDHDHELALHYTGMLKECVRHQVVAKYILESKNLEKFFD 176
Query: 171 YVELPNFDIASDALNTFKDLLTKHETVVAEFLSSHYEQFFELY-TRLLTSPNYVTRRQSV 229
YV+LP FD+A+DA F++LLT+H++ VAE+L+ +YE FF Y T+LL +Y T+RQ+
Sbjct: 177 YVQLPYFDVATDASKIFRELLTRHKSTVAEYLAKNYEWFFAEYNTKLLEKGSYFTKRQAS 236
Query: 230 KFLSEFLLEAPNARIMKRYITEVRFLNIMITLLKDSSKNIRICAFHVFKVFVANPNKPRS 289
K L + L++ N+ +M +Y++ + L IM+ LL++ +KNI++ AFH+FK+FVAN NKP
Sbjct: 237 KLLGDVLMDRSNSGVMVKYVSSLDNLRIMMNLLREPTKNIQLEAFHIFKLFVANENKPED 296
Query: 290 IIEALIENRRELLKLLQNLPTSKGEDELDEERNLIIQGIQKLA 332
I+ L+ NR ++L+L +L K + + ++ L++ I L+
Sbjct: 297 IVAILVANRTKILRLFADLKPEKEDVGFETDKALVMNEIATLS 339
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.137 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,179,582
Number of extensions: 302937
Number of successful extensions: 918
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 911
Number of HSP's successfully gapped: 4
Length of query: 336
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 237
Effective length of database: 8,392,385
Effective search space: 1988995245
Effective search space used: 1988995245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 112 (47.8 bits)