BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0512200 Os07g0512200|AK059939
(119 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0512200 Similar to Symbiosis-related like protein 243 3e-65
Os04g0624000 Similar to Symbiosis-related like protein 221 7e-59
Os08g0191600 Similar to Symbiosis-related like protein 221 8e-59
Os11g0100100 Similar to Gamma-aminobutyric acid receptor-as... 137 1e-33
AK065550 116 3e-27
Os02g0529150 70 4e-13
>Os07g0512200 Similar to Symbiosis-related like protein
Length = 119
Score = 243 bits (619), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 119/119 (100%), Positives = 119/119 (100%)
Query: 1 MARTSFKLEHPLERRQAESARIREKYSDRIPVIVEKADKTDVPEIDKKKYLVPADLTVGQ 60
MARTSFKLEHPLERRQAESARIREKYSDRIPVIVEKADKTDVPEIDKKKYLVPADLTVGQ
Sbjct: 1 MARTSFKLEHPLERRQAESARIREKYSDRIPVIVEKADKTDVPEIDKKKYLVPADLTVGQ 60
Query: 61 FVYVVRKRIKLSPEKAIFVFVKNTLPPTASLMSAIYEENKDEDGFLYMTYSGENTFGSA 119
FVYVVRKRIKLSPEKAIFVFVKNTLPPTASLMSAIYEENKDEDGFLYMTYSGENTFGSA
Sbjct: 61 FVYVVRKRIKLSPEKAIFVFVKNTLPPTASLMSAIYEENKDEDGFLYMTYSGENTFGSA 119
>Os04g0624000 Similar to Symbiosis-related like protein
Length = 119
Score = 221 bits (564), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 104/117 (88%), Positives = 115/117 (98%)
Query: 1 MARTSFKLEHPLERRQAESARIREKYSDRIPVIVEKADKTDVPEIDKKKYLVPADLTVGQ 60
MA++SFKL+H LERRQAE+ RIREKYSDRIPVIVEKA+++D+P+IDKKKYLVPADLTVGQ
Sbjct: 1 MAKSSFKLDHTLERRQAEANRIREKYSDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQ 60
Query: 61 FVYVVRKRIKLSPEKAIFVFVKNTLPPTASLMSAIYEENKDEDGFLYMTYSGENTFG 117
FVYVVRKRIKLSPEKAIF+FVKNTLPPTA+LMSAIYEENKDEDGFLYMTYSGENTFG
Sbjct: 61 FVYVVRKRIKLSPEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117
>Os08g0191600 Similar to Symbiosis-related like protein
Length = 120
Score = 221 bits (564), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 105/117 (89%), Positives = 114/117 (97%)
Query: 1 MARTSFKLEHPLERRQAESARIREKYSDRIPVIVEKADKTDVPEIDKKKYLVPADLTVGQ 60
MAR+SFKLEHPLERRQAE+ RIREKY DRIPVIVEKA+++D+P+IDKKKYLVPADLTVGQ
Sbjct: 1 MARSSFKLEHPLERRQAEANRIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQ 60
Query: 61 FVYVVRKRIKLSPEKAIFVFVKNTLPPTASLMSAIYEENKDEDGFLYMTYSGENTFG 117
FVYVVRKRIKLS EKAIF+FVKNTLPPTA+LMSAIYEENKDEDGFLYMTYSGENTFG
Sbjct: 61 FVYVVRKRIKLSAEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117
>Os11g0100100 Similar to Gamma-aminobutyric acid receptor-associated protein-like
2 (GABA(A) receptor-associated protein-like 2)
(Ganglioside expression factor 2) (GEF-2) (General
protein transport factor p16) (MAP1 light chain 3
related protein)
Length = 118
Score = 137 bits (346), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 65/113 (57%), Positives = 84/113 (74%), Gaps = 1/113 (0%)
Query: 6 FKLEHPLERRQAESARIREKYSDRIPVIVEKADKTDVPEIDKKKYLVPADLTVGQFVYVV 65
FK E LE R ESA + Y DRIPVIVEK ++++PE++K+KYLVP ++ VGQF++++
Sbjct: 6 FKEEFTLEERAKESAAMIASYPDRIPVIVEKFSRSNLPEMEKRKYLVPCNMPVGQFIFIL 65
Query: 66 RKRIKLSPEKAIFVFVKNTLPPTASLMSAIYEENKDE-DGFLYMTYSGENTFG 117
R R+ LSP A+FVFV NTLP TA LM ++YE KDE DGFLY+ YS E TFG
Sbjct: 66 RSRLHLSPGTALFVFVNNTLPQTAQLMGSVYESYKDEGDGFLYLCYSSEKTFG 118
>AK065550
Length = 89
Score = 116 bits (291), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 52/89 (58%), Positives = 69/89 (77%), Gaps = 1/89 (1%)
Query: 30 IPVIVEKADKTDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFVFVKNTLPPTA 89
+ VIVE+ ++ +PE++K+KYLVP D+ VGQF++++R R+ LSP A+FVFV NTLP TA
Sbjct: 1 LQVIVERFSRSSLPEMEKRKYLVPCDMPVGQFIFILRSRLHLSPGIALFVFVNNTLPQTA 60
Query: 90 SLMSAIYEENKDE-DGFLYMTYSGENTFG 117
LM ++YE KDE DGFLYM YS E TFG
Sbjct: 61 QLMGSVYESYKDEDDGFLYMCYSSEKTFG 89
>Os02g0529150
Length = 87
Score = 70.1 bits (170), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 50/85 (58%), Gaps = 20/85 (23%)
Query: 34 VEKADKTDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFVFVKNTLPPTASLMS 93
V+K ++++PE++K+K +P P A+FVFV NTLP TA LM
Sbjct: 22 VDKFSRSNLPEMEKRKLHLP-------------------PGTALFVFVNNTLPQTAQLMG 62
Query: 94 AIYEENKDE-DGFLYMTYSGENTFG 117
++YE KDE DGFLY+ YS E TFG
Sbjct: 63 SVYESYKDEGDGFLYLCYSSEKTFG 87
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.133 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,822,589
Number of extensions: 138335
Number of successful extensions: 297
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 293
Number of HSP's successfully gapped: 6
Length of query: 119
Length of database: 17,035,801
Length adjustment: 85
Effective length of query: 34
Effective length of database: 12,597,611
Effective search space: 428318774
Effective search space used: 428318774
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 149 (62.0 bits)