BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0469100 Os07g0469100|AK120365
         (150 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0469100  Similar to Thylakoid membrane phosphoprotein 1...   233   6e-62
Os10g0536500  Conserved hypothetical protein                       97   5e-21
Os01g0761000  Conserved hypothetical protein                       69   1e-12
Os09g0250300  Hypothetical protein                                 68   3e-12

>Os07g0469100 Similar to Thylakoid membrane phosphoprotein 14 kDa, chloroplast
           precursor
          Length = 150

 Score =  233 bits (593), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 122/150 (81%), Positives = 122/150 (81%)

Query: 1   MAATTCXXXXXXXXXXXXXXXXTTVAFAVAATGIKYGLRASRGVAIRAADGTGSETEVPE 60
           MAATTC                TTVAFAVAATGIKYGLRASRGVAIRAADGTGSETEVPE
Sbjct: 1   MAATTCRLAAAPLVLAPLPRRPTTVAFAVAATGIKYGLRASRGVAIRAADGTGSETEVPE 60

Query: 61  VVKAAQDAWAKVEDKYAVTAIGVAALVGLWTAIGAIKAIDRXXXXXXXXXXXXIGYTGWF 120
           VVKAAQDAWAKVEDKYAVTAIGVAALVGLWTAIGAIKAIDR            IGYTGWF
Sbjct: 61  VVKAAQDAWAKVEDKYAVTAIGVAALVGLWTAIGAIKAIDRLPLLPGVLELVGIGYTGWF 120

Query: 121 TYRNLIFQPDREALVSKIKSTYNEITGSSS 150
           TYRNLIFQPDREALVSKIKSTYNEITGSSS
Sbjct: 121 TYRNLIFQPDREALVSKIKSTYNEITGSSS 150



>Os10g0536500 Conserved hypothetical protein
          Length = 172

 Score = 96.7 bits (239), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 58/89 (65%)

Query: 57  EVPEVVKAAQDAWAKVEDKYAVTAIGVAALVGLWTAIGAIKAIDRXXXXXXXXXXXXIGY 116
           E+ E + A +  W ++EDKYAVT + VAA +G+W+A G + AIDR            IGY
Sbjct: 81  EITEFINALKQEWDRIEDKYAVTTLAVAASLGMWSAGGVVSAIDRLPIVPGLMEAVGIGY 140

Query: 117 TGWFTYRNLIFQPDREALVSKIKSTYNEI 145
           +GWF YRNL+F+PDREA  +K++  Y +I
Sbjct: 141 SGWFAYRNLLFKPDREAFFAKVREVYEDI 169



>Os01g0761000 Conserved hypothetical protein
          Length = 151

 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 58/120 (48%)

Query: 28  AVAATGIKYGLRASRGVAIRAADGTGSETEVPEVVKAAQDAWAKVEDKYAVTAIGVAALV 87
           AV +T    G   SR V    A    SE     VVK  Q +++  ED +A+  IG A + 
Sbjct: 31  AVPSTRFVSGRMRSRNVVAAKAAQDSSEPSSGSVVKYVQSSFSSPEDLFALAGIGFAGIA 90

Query: 88  GLWTAIGAIKAIDRXXXXXXXXXXXXIGYTGWFTYRNLIFQPDREALVSKIKSTYNEITG 147
            LW +I  ++ ID+            I     F Y+NL+F+PDRE  ++ IKS+ + + G
Sbjct: 91  ALWASINLVEVIDKLPVLPLLFELIGILVAWLFIYQNLLFKPDREKFLNNIKSSVSRVLG 150



>Os09g0250300 Hypothetical protein
          Length = 92

 Score = 67.8 bits (164), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/53 (73%), Positives = 41/53 (77%), Gaps = 5/53 (9%)

Query: 50  DGTGSETEV-PEVVKAAQDAWAKVEDKYAVTAIGVAALVGLWTAIGAIKAIDR 101
           +GT    EV PE  +     WAKVEDKYAVTAIGVAALVGLWTAIGAIKAIDR
Sbjct: 34  EGTRRVVEVGPETARQ----WAKVEDKYAVTAIGVAALVGLWTAIGAIKAIDR 82



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.129    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,402,229
Number of extensions: 99942
Number of successful extensions: 381
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 380
Number of HSP's successfully gapped: 5
Length of query: 150
Length of database: 17,035,801
Length adjustment: 92
Effective length of query: 58
Effective length of database: 12,232,113
Effective search space: 709462554
Effective search space used: 709462554
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 151 (62.8 bits)