BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0445600 Os07g0445600|AK074000
(814 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0445600 Conserved hypothetical protein 768 0.0
Os03g0861100 Conserved hypothetical protein 487 e-137
Os07g0616000 Conserved hypothetical protein 129 7e-30
Os03g0330300 Viral attachment protein, fibre shaft repeat c... 72 1e-12
>Os07g0445600 Conserved hypothetical protein
Length = 814
Score = 768 bits (1984), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/422 (90%), Positives = 381/422 (90%)
Query: 393 PSVVVIKNVNVTSKKHXXXXXXXXXXXXXXXXXXXXTXXXXXXXXXXXXXXXXXXXXXTN 452
PSVVVIKNVNVTSKKH T TN
Sbjct: 393 PSVVVIKNVNVTSKKHGSSESESQSSSEDGSQDSDDTHYKKRHGKHKSSGSKKKEGAKTN 452
Query: 453 FDSGDDYNNKDESSYGQDADQGNWNAFQSFLMRAEEKTRSNDADMFSGEKAPPSRKKNNV 512
FDSGDDYNNKDESSYGQDADQGNWNAFQSFLMRAEEKTRSNDADMFSGEKAPPSRKKNNV
Sbjct: 453 FDSGDDYNNKDESSYGQDADQGNWNAFQSFLMRAEEKTRSNDADMFSGEKAPPSRKKNNV 512
Query: 513 NTADPILLAGGDSGDVYEQRGAGFDPVNGRSRAIRLQSNDELMMSGEGGRYMDGEIKEIE 572
NTADPILLAGGDSGDVYEQRGAGFDPVNGRSRAIRLQSNDELMMSGEGGRYMDGEIKEIE
Sbjct: 513 NTADPILLAGGDSGDVYEQRGAGFDPVNGRSRAIRLQSNDELMMSGEGGRYMDGEIKEIE 572
Query: 573 AGGGRYRRGTSEDFMLYGQERSMDRRSALDPLAEARYRNPNQVDKNGYAAADESFIIPLR 632
AGGGRYRRGTSEDFMLYGQERSMDRRSALDPLAEARYRNPNQVDKNGYAAADESFIIPLR
Sbjct: 573 AGGGRYRRGTSEDFMLYGQERSMDRRSALDPLAEARYRNPNQVDKNGYAAADESFIIPLR 632
Query: 633 SGSQDNVGPEYRATIDIDVELPTNTKKTSDGKAGTQLFYEPDELMPERGSEDASFGYDPA 692
SGSQDNVGPEYRATIDIDVELPTNTKKTSDGKAGTQLFYEPDELMPERGSEDASFGYDPA
Sbjct: 633 SGSQDNVGPEYRATIDIDVELPTNTKKTSDGKAGTQLFYEPDELMPERGSEDASFGYDPA 692
Query: 693 MDYESNMMVRAVKVEDSNDEDVSHSNDGDVKKPEKEKIRGTKDGSDKRKKDAILRRLSAP 752
MDYESNMMVRAVKVEDSNDEDVSHSNDGDVKKPEKEKIRGTKDGSDKRKKDAILRRLSAP
Sbjct: 693 MDYESNMMVRAVKVEDSNDEDVSHSNDGDVKKPEKEKIRGTKDGSDKRKKDAILRRLSAP 752
Query: 753 KTPLNDAQKRAQNMRAYKADLQKLKKEQTILFRDRGGTTEQVGGSKRVICKFRDRDDTVE 812
KTPLNDAQKRAQNMRAYKADLQKLKKEQTILFRDRGGTTEQVGGSKRVICKFRDRDDTVE
Sbjct: 753 KTPLNDAQKRAQNMRAYKADLQKLKKEQTILFRDRGGTTEQVGGSKRVICKFRDRDDTVE 812
Query: 813 QV 814
QV
Sbjct: 813 QV 814
Score = 637 bits (1642), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 303/313 (96%), Positives = 303/313 (96%)
Query: 1 MRPDARLDAAVFQLTPTRTRFDLVVIVNGRKEKIASGLLNPFLAHLKVAQDQIAKGGYSI 60
MRPDARLDAAVFQLTPTRTRFDLVVIVNGRKEKIASGLLNPFLAHLKVAQDQIAKGGYSI
Sbjct: 1 MRPDARLDAAVFQLTPTRTRFDLVVIVNGRKEKIASGLLNPFLAHLKVAQDQIAKGGYSI 60
Query: 61 TLEPSSGVGAPWFTRGTVERFVRFVSTPEVLERVTTIESEILQLEDAISIQSNDNLGLRS 120
TLEPSSGVGAPWFTRGTVERFVRFVSTPEVLERVTTIESEILQLEDAISIQSNDNLGLRS
Sbjct: 61 TLEPSSGVGAPWFTRGTVERFVRFVSTPEVLERVTTIESEILQLEDAISIQSNDNLGLRS 120
Query: 121 VEDHGGKLTESNEGTRANHSPDADKAIVIYQPGSQPTPAVHDETTTHEENSKVQLLRVLE 180
VEDHGGKLTESNEGTRANHSPDADKAIVIYQPGSQPTPAVHDETTTHEENSKVQLLRVLE
Sbjct: 121 VEDHGGKLTESNEGTRANHSPDADKAIVIYQPGSQPTPAVHDETTTHEENSKVQLLRVLE 180
Query: 181 TRKNVLRKEQXXXXXXXXXXGFDIDNLGYLIAFAERFGASRLMRACSQFIELWKRKHETG 240
TRKNVLRKEQ GFDIDNLGYLIAFAERFGASRLMRACSQFIELWKRKHETG
Sbjct: 181 TRKNVLRKEQAMAFARAVAAGFDIDNLGYLIAFAERFGASRLMRACSQFIELWKRKHETG 240
Query: 241 QWIEVEPEAMSTHSEFPPFNPSGIVFVGDNMKQNTETMSVSNGEANGEDASKAEHKSGQQ 300
QWIEVEPEAMSTHSEFPPFNPSGIVFVGDNMKQNTETMSVSNGEANGEDASKAEHKSGQQ
Sbjct: 241 QWIEVEPEAMSTHSEFPPFNPSGIVFVGDNMKQNTETMSVSNGEANGEDASKAEHKSGQQ 300
Query: 301 MGYQAAYPPWAMH 313
MGYQAAYPPWAMH
Sbjct: 301 MGYQAAYPPWAMH 313
>Os03g0861100 Conserved hypothetical protein
Length = 1256
Score = 487 bits (1253), Expect = e-137, Method: Compositional matrix adjust.
Identities = 229/322 (71%), Positives = 263/322 (81%), Gaps = 9/322 (2%)
Query: 1 MRPDARLDAAVFQLTPTRTRFDLVVIVNGRKEKIASGLLNPFLAHLKVAQDQIAKGGYSI 60
MRP+ RLD+AVFQLTPTRTR DLVVI NGRKEKIASGLLNPF+AHLKVAQ QIAKGGYSI
Sbjct: 1 MRPETRLDSAVFQLTPTRTRCDLVVIANGRKEKIASGLLNPFVAHLKVAQQQIAKGGYSI 60
Query: 61 TLEPSSGVGAPWFTRGTVERFVRFVSTPEVLERVTTIESEILQLEDAISIQSNDNLGLRS 120
TLE + APWFTRGTVERFVRFVSTPEVLERVTTIESEILQ+EDAI+ Q DNLGLRS
Sbjct: 61 TLEVDPEIDAPWFTRGTVERFVRFVSTPEVLERVTTIESEILQIEDAITGQGGDNLGLRS 120
Query: 121 VEDHGGKLTESNEGTRANHSPDADKAIVIYQPGSQPTPAVHDETTTHEENSKVQLLRVLE 180
VED+ KL E G++ N+ D DK++++Y+PG QP P V ++ T EENSKVQLLRVLE
Sbjct: 121 VEDYNEKLAECIGGSKTNYDLDGDKSLILYKPGIQPPPPVQNDNATQEENSKVQLLRVLE 180
Query: 181 TRKNVLRKEQXXXXXXXXXXGFDIDNLGYLIAFAERFGASRLMRACSQFIELWKRKHETG 240
TRK VLRKEQ GF+IDNLG+LI FA+RFGASRLM+AC+QF ELW+RKHETG
Sbjct: 181 TRKIVLRKEQAMAFARAVAAGFNIDNLGFLITFADRFGASRLMKACTQFTELWRRKHETG 240
Query: 241 QWIEVEPEAMSTHSEFPPFNPSGIVFVGDNMKQNTETMSVSNGEANGEDASKAEHKSGQQ 300
QWIEVEPEAMS SEFPPFN SGI+F+GDNMKQN ET+S+SNG+ANGEDA+KA+ ++ Q
Sbjct: 241 QWIEVEPEAMSARSEFPPFNASGIMFMGDNMKQNLETLSISNGDANGEDAAKADQRTAQH 300
Query: 301 MG---------YQAAYPPWAMH 313
G YQ+AYPPWA+H
Sbjct: 301 SGAPSEYLHGPYQSAYPPWAIH 322
Score = 374 bits (961), Expect = e-103, Method: Compositional matrix adjust.
Identities = 208/390 (53%), Positives = 266/390 (68%), Gaps = 4/390 (1%)
Query: 393 PSVVVIKNVNVTSKKHXXXXXXXXXXXXXXXXXXXXTXXXXXXXXXXXXXXXXXXXXXTN 452
PSVVVI+N+NVTSKKH +
Sbjct: 404 PSVVVIRNINVTSKKHGSSESESQTSSDVASEDSDDSHTEYSKRKNKRSSSKKKESRKII 463
Query: 453 FDSGDDYNNKDESSYGQDADQGNWNAFQSFLMRAEEKTRSNDADMFSGEKAPP-SRKKNN 511
+ GD+Y+ +DE ++ QD DQGNWN FQSFL+R EEKT+ NDAD+F+ E+ PP +R+K +
Sbjct: 464 LEPGDEYS-RDEVAHRQDGDQGNWNVFQSFLLRTEEKTKDNDADLFATERGPPPARRKES 522
Query: 512 VNTADPILLAGGDSGDVYEQRGAGFDPVNGRSRAIRLQSNDELMMSGEGGRYMDGEIKEI 571
T DP+LL DS D E + GF+ +GR R+ ++ S DEL++S EG ++DG+IKEI
Sbjct: 523 RTTDDPLLLVERDSTDFNEGKTIGFNSAHGRIRSRKMLSGDELVISAEGRSFVDGDIKEI 582
Query: 572 EAGGGRYRRGTSEDFMLYGQERSMDRRSALDPLAEARYRNPNQVDKNGYAAADESFIIPL 631
EAGGG YRRG SEDF++YGQE+ MD S LDPLAE +Y++P ++KN ++ ADESF+IP+
Sbjct: 583 EAGGGGYRRGASEDFIVYGQEKPMDSGSYLDPLAEGQYKSPTLMEKNMHSVADESFMIPV 642
Query: 632 RSGSQDNVGPEYRATIDIDVELPTNTKKTSDGKAGTQLFYEPDELMPERGSEDASFGYDP 691
RS SQDN+GPE IDIDVELP KKT+D KAG QLFYEPDELMPER ED ++GYDP
Sbjct: 643 RSNSQDNLGPESCTAIDIDVELPGTVKKTTDAKAGDQLFYEPDELMPEREYEDVTYGYDP 702
Query: 692 AMDYESNMMVR-AVKVEDSNDEDVSHSNDGDVKKPEKEKIRGTKDGSDKRKKDAILRRLS 750
AMDY+S M ++ A+ VED+N +DVS +G+VKK EK+K ++ DK KKDA RRL
Sbjct: 703 AMDYDSQMQIQPAIMVEDANADDVSLGVEGEVKKLEKDKKLRLQECLDK-KKDASARRLP 761
Query: 751 APKTPLNDAQKRAQNMRAYKADLQKLKKEQ 780
+ KT L DAQKRAQN+RAYKADLQK KKEQ
Sbjct: 762 SSKTRLTDAQKRAQNLRAYKADLQKAKKEQ 791
>Os07g0616000 Conserved hypothetical protein
Length = 1365
Score = 129 bits (325), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 87/260 (33%), Positives = 127/260 (48%), Gaps = 44/260 (16%)
Query: 1 MRPDARLDAAVFQLTPTRTRFDLVVIVNGRKEKIASGLLNPFLAHLKVAQDQIAKGGYSI 60
M PDA LD A+FQL+P R+R +LVV NGR E+IASG + PF+AHL+ A++Q A
Sbjct: 1 MEPDAPLDFALFQLSPRRSRCELVVSGNGRTERIASGSVKPFVAHLRAAEEQAAAQPPPP 60
Query: 61 TLEPSSGVGAPWFTRGTVERFVRFVSTPEVLERVTTIESEILQLEDAISIQSNDNLGLRS 120
+ A WF++GT+ERFVRFVSTPEVLE T ++E+ QL
Sbjct: 61 AIRLQLDRRAAWFSKGTLERFVRFVSTPEVLEMANTFDAEMSQL---------------- 104
Query: 121 VEDHGGKLTESNEGTRANHSPDADKAIVIYQPGSQPTPAVHDETTTHEENSKVQLLRVLE 180
EG R IY G + + K L R ++
Sbjct: 105 ------------EGARK-----------IYAQGVAGGADGAESAAAADITKKELL-RAID 140
Query: 181 TRKNVLRKEQXXXXXXXXXXGFDIDNLGYLIAFAERFGASRLMRACSQFIELWKRKHETG 240
R + L+++ GF+ D++ L+ FA+ FGA+RL AC++F+ L +R+ +
Sbjct: 141 VRLSALKQDLVTACARASSAGFNPDSVSELVLFADHFGANRLSEACNKFMSLCQRRPDIC 200
Query: 241 QWIEVEPEAMSTHSEFPPFN 260
V ST S++ F+
Sbjct: 201 PHYSVS----STSSQWKSFD 216
>Os03g0330300 Viral attachment protein, fibre shaft repeat containing protein
Length = 1073
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/263 (26%), Positives = 110/263 (41%), Gaps = 46/263 (17%)
Query: 4 DARLDAAVFQLTPTRTRFDLVVIVNGRKEKIASGLLNPFLAHLKVA---QDQIAKGGYSI 60
+ LD+AVFQ++ + R++ + G E IASG + + HL+ A Q G + +
Sbjct: 8 NVELDSAVFQVSSAQNRYEAIACSKGNTELIASGPFDQLVLHLEDARKFQSCSTAGTFKL 67
Query: 61 TLEPSSGVGAPWFTRGTVERFVRFVSTPEVLERVTTIESEILQLEDAISIQSNDNLGLRS 120
+L + G+ WFT+ T+ RF+ +++P+ + I EI QLE+ + L S
Sbjct: 68 SLS-GNAKGSSWFTKSTIARFLNTINSPDASKSANGILHEISQLEETRKFHQS----LYS 122
Query: 121 VEDH---GGKLTESNEGTRANHSPDADKAIVIYQPGSQPTPAVHDETTTHEENSKVQLLR 177
E GG L+ GT I + Q G + E +K +LLR
Sbjct: 123 KEQRNPMGGALSGGVFGT-----------IGVEQQG--------NVGPNSSEATKNELLR 163
Query: 178 VLETRKNVLRKEQXXXXXXXXXXGFDIDNLGYLIAFAERFGASR---LMRACSQFIELWK 234
L+ R VL++E ++ L +F + FGAS LMR C I
Sbjct: 164 ALDLRLTVLKEEIFALLNRAVVSNMSTRDVSDLSSFVQHFGASEFSWLMR-CLLLIP--- 219
Query: 235 RKHETGQWIEVEPEAMSTHSEFP 257
+ +P +S FP
Sbjct: 220 ---------DCQPSEVSQQQSFP 233
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.131 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 25,142,773
Number of extensions: 1115832
Number of successful extensions: 2487
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 2481
Number of HSP's successfully gapped: 6
Length of query: 814
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 705
Effective length of database: 11,344,475
Effective search space: 7997854875
Effective search space used: 7997854875
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 160 (66.2 bits)