FiT-DB / Search/ Help/ Sample detail

Os07g0616000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.81 (0.0184) R2 : 0.397
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.15 (0.0798) R2dE : 0.315 R2E : 0.369
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.155 (0.0409) R2dN8 : 0.0282 R2N8 : 0.082
σ : 0.341
deviance : 53.47
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 28.61
memory length : 978
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
43.16 0.309 7.8 0.306 0.558 -1.32 0.536 -0.676 0.167 1.25 26.7 78 -- --
43.72 0.308 7.81 0.215 0.573 -1.29 0.442 -- 0.143 1.23 27.1 73 -- --
43.99 0.309 7.81 0.235 0.568 -1.28 -- -0.283 0.157 1.16 26.9 70 -- --
44.05 0.309 7.82 0.185 0.562 -1.27 -- -- 0.14 1.14 26.96 70 -- --
53.06 0.339 7.8 0.207 -- -1.2 -- -0.541 0.146 -- 27.6 1003 -- --
66.62 0.383 7.75 0.503 0.264 -- 0.17 -- 0.422 23.5 -- -- -- --
66.74 0.383 7.75 0.496 0.264 -- -- -- 0.422 23.3 -- -- -- --
52.66 0.338 7.8 0.188 -- -1.07 -- -- 0.193 -- 28.73 954 -- --
44.82 0.312 7.83 -- 0.579 -1.34 -- -- 0.107 1.21 26.98 70 -- --
71.1 0.394 7.75 0.503 -- -- -- -- 0.424 -- -- -- -- --
73.23 0.4 7.77 -- 0.269 -- -- -- 0.367 23.5 -- -- -- --
53.47 0.341 7.81 -- -- -1.15 -- -- 0.155 -- 28.61 978 -- --
77.77 0.412 7.76 -- -- -- -- -- 0.369 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 44.38 temperature 25 90 < th dose dependent rect. 23 23
2 44.54 temperature 30 90 < th dose dependent rect. 11 22
8 44.88 temperature 30 30 < th dose dependent rect. 19 23
9 44.98 temperature 25 90 < th dose dependent rect. 1 23
10 45.05 temperature 25 90 < th dose dependent no NA NA
12 45.08 temperature 25 90 < th dose dependent rect. 9 23
14 45.23 temperature 25 90 < th dose dependent rect. 3 23
19 45.38 temperature 25 90 < th dose dependent rect. 7 23
21 45.40 temperature 25 30 < th dose dependent rect. 5 23
24 45.50 temperature 25 90 < th dose dependent rect. 21 23
28 45.57 temperature 30 10 < th dose dependent rect. 13 23
31 45.61 temperature 25 90 < th dose dependent rect. 17 23
36 45.67 temperature 15 90 > th dose dependent rect. 6 23
43 45.78 temperature 30 10 < th dose dependent rect. 11 23
98 46.32 temperature 30 90 < th dose dependent rect. 15 17
130 46.59 temperature 30 10 < th dose dependent rect. 14 18
152 46.77 temperature 25 90 < th dose dependent rect. 3 20
195 47.03 temperature 10 10 > th dose dependent no NA NA
367 48.05 temperature 15 10 > th dose dependent rect. 7 23
402 48.28 temperature 25 90 < th dose dependent rect. 5 18
497 48.77 temperature 20 10 > th dose dependent rect. 13 23
542 49.07 temperature 15 90 > th dose dependent rect. 2 23
548 49.12 temperature 25 10 < th dose dependent sin 19 NA
552 49.15 temperature 20 10 > th dose dependent rect. 2 23
556 49.20 temperature 25 90 < th dose dependent sin 20 NA
560 49.21 temperature 25 10 < th dose dependent rect. 5 19
659 49.74 temperature 20 10 > th dose dependent rect. 21 23
667 49.79 temperature 15 90 > th dose dependent rect. 17 23
680 49.90 temperature 25 720 < th dose dependent rect. 7 16
691 49.94 temperature 15 90 > th dose dependent sin 9 NA
695 49.95 temperature 25 1440 < th dose dependent rect. 15 21
696 49.95 temperature 25 1440 < th dose dependent rect. 17 21
697 49.95 temperature 25 1440 < th dose dependent rect. 21 21
698 49.95 temperature 25 1440 < th dose dependent rect. 9 22
716 49.97 temperature 25 1440 < th dose dependent rect. 13 23
718 49.97 temperature 25 1440 < th dose dependent rect. 24 23
720 49.98 temperature 25 1440 < th dose dependent rect. 21 19
728 49.99 temperature 25 1440 < th dose dependent rect. 21 17
745 50.00 temperature 25 1440 < th dose dependent no NA NA
747 50.00 temperature 25 1440 < th dose dependent rect. 24 18
753 50.01 temperature 25 1440 < th dose dependent rect. 24 14
761 50.01 temperature 25 1440 < th dose dependent rect. 5 23
786 50.03 temperature 15 90 > th dose dependent rect. 20 23
836 50.10 temperature 30 90 < th dose dependent sin 9 NA
848 50.11 temperature 25 1440 < th dose dependent sin 4 NA
899 50.19 temperature 25 720 < th dose dependent sin 20 NA
913 50.21 temperature 25 1440 < th dose dependent rect. 13 19
927 50.23 temperature 25 1440 < th dose dependent rect. 15 17
931 50.24 temperature 25 4320 < th dose dependent rect. 21 1
965 50.29 temperature 25 4320 < th dose dependent rect. 11 14
984 50.32 temperature 25 1440 < th dose dependent sin 14 NA