BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0616000 Os07g0616000|AK120310
(1365 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0616000 Conserved hypothetical protein 2455 0.0
Os03g0861100 Conserved hypothetical protein 142 2e-33
Os07g0445600 Conserved hypothetical protein 110 8e-24
>Os07g0616000 Conserved hypothetical protein
Length = 1365
Score = 2455 bits (6362), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1223/1365 (89%), Positives = 1223/1365 (89%)
Query: 1 MEPDAPLDFALFQLSPRRSRCELVVSGNGRTERIASGSVKPFVAHLRXXXXXXXXXXXXX 60
MEPDAPLDFALFQLSPRRSRCELVVSGNGRTERIASGSVKPFVAHLR
Sbjct: 1 MEPDAPLDFALFQLSPRRSRCELVVSGNGRTERIASGSVKPFVAHLRAAEEQAAAQPPPP 60
Query: 61 XIRLQLDRRAAWFSKGTLERFVRFVSTPEVLEMANTFDAEMSQLEGARKIYAQXXXXXXX 120
IRLQLDRRAAWFSKGTLERFVRFVSTPEVLEMANTFDAEMSQLEGARKIYAQ
Sbjct: 61 AIRLQLDRRAAWFSKGTLERFVRFVSTPEVLEMANTFDAEMSQLEGARKIYAQGVAGGAD 120
Query: 121 XXXXXXXXDITKKELLRAIDVRLSALKQDLVTACARASSAGFNPDSVSELVLFADHFGAN 180
DITKKELLRAIDVRLSALKQDLVTACARASSAGFNPDSVSELVLFADHFGAN
Sbjct: 121 GAESAAAADITKKELLRAIDVRLSALKQDLVTACARASSAGFNPDSVSELVLFADHFGAN 180
Query: 181 RLSEACNKFMSLCQRRPDICPHYSVSSTSSQWKSFDDGNVRGSSSSDMSLDETQADQGAS 240
RLSEACNKFMSLCQRRPDICPHYSVSSTSSQWKSFDDGNVRGSSSSDMSLDETQADQGAS
Sbjct: 181 RLSEACNKFMSLCQRRPDICPHYSVSSTSSQWKSFDDGNVRGSSSSDMSLDETQADQGAS 240
Query: 241 SNKSIIGGSVSHIHRSNSQNSVDVPPEPSAVQHPKPTIQQSVEKQEKETDALXXXXXXXX 300
SNKSIIGGSVSHIHRSNSQNSVDVPPEPSAVQHPKPTIQQSVEKQEKETDAL
Sbjct: 241 SNKSIIGGSVSHIHRSNSQNSVDVPPEPSAVQHPKPTIQQSVEKQEKETDALPAPAPAGG 300
Query: 301 XSRRLSVQDRINMFESKQKEQTSSSGNSAACTSKVVPTKGEHRRVPSGASMDKLVRRWSN 360
SRRLSVQDRINMFESKQKEQTSSSGNSAACTSKVVPTKGEHRRVPSGASMDKLVRRWSN
Sbjct: 301 GSRRLSVQDRINMFESKQKEQTSSSGNSAACTSKVVPTKGEHRRVPSGASMDKLVRRWSN 360
Query: 361 VXXXXXXXXXXXXXXXXEKREIGTPVGTPTSANLEVNSKARADGDANGLKHAVTSCQKDT 420
V EKREIGTPVGTPTSANLEVNSKARADGDANGLKHAVTSCQKDT
Sbjct: 361 VSDMSIDLSNNDSSSLNEKREIGTPVGTPTSANLEVNSKARADGDANGLKHAVTSCQKDT 420
Query: 421 SDALPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQKQTAPRVEDDMVITSSIESESSFR 480
SDALPL QKQTAPRVEDDMVITSSIESESSFR
Sbjct: 421 SDALPLDSTTADAFSSSTLNTTSPSPLSAIASSSPQKQTAPRVEDDMVITSSIESESSFR 480
Query: 481 KEVGASQGKGDVRMSGQAVSSVSTRARVKTSPRPTWPENNVTLSSPPLSQEHVQMTDEET 540
KEVGASQGKGDVRMSGQAVSSVSTRARVKTSPRPTWPENNVTLSSPPLSQEHVQMTDEET
Sbjct: 481 KEVGASQGKGDVRMSGQAVSSVSTRARVKTSPRPTWPENNVTLSSPPLSQEHVQMTDEET 540
Query: 541 IPIVHEVAVKKEQIVQKDNRGSRLRSKEIHAEADVVGRKDRPSRTTGKISDTRTRATSNP 600
IPIVHEVAVKKEQIVQKDNRGSRLRSKEIHAEADVVGRKDRPSRTTGKISDTRTRATSNP
Sbjct: 541 IPIVHEVAVKKEQIVQKDNRGSRLRSKEIHAEADVVGRKDRPSRTTGKISDTRTRATSNP 600
Query: 601 RANFRGSSVRDEAASTEAEVHDVNLQRKSLARKVEDSGRKVAAGSEILPQSDCSIHQGTN 660
RANFRGSSVRDEAASTEAEVHDVNLQRKSLARKVEDSGRKVAAGSEILPQSDCSIHQGTN
Sbjct: 601 RANFRGSSVRDEAASTEAEVHDVNLQRKSLARKVEDSGRKVAAGSEILPQSDCSIHQGTN 660
Query: 661 LSRQSSSAEQELSLHGGKVKLISDGNAVPLEQTKRPTKGSQDRHDELQKKANELEKLFAA 720
LSRQSSSAEQELSLHGGKVKLISDGNAVPLEQTKRPTKGSQDRHDELQKKANELEKLFAA
Sbjct: 661 LSRQSSSAEQELSLHGGKVKLISDGNAVPLEQTKRPTKGSQDRHDELQKKANELEKLFAA 720
Query: 721 QKLTSSRRGKSTDVQVENTPRVNEVKPPLVLPERIYTKQIVKESITNEFDANELLKMVDT 780
QKLTSSRRGKSTDVQVENTPRVNEVKPPLVLPERIYTKQIVKESITNEFDANELLKMVDT
Sbjct: 721 QKLTSSRRGKSTDVQVENTPRVNEVKPPLVLPERIYTKQIVKESITNEFDANELLKMVDT 780
Query: 781 EGYNNNVPQSIISLEESRGKFYDQYMQKRDAKLKEDWKLQGEQKEATIKAMRDSLERSNA 840
EGYNNNVPQSIISLEESRGKFYDQYMQKRDAKLKEDWKLQGEQKEATIKAMRDSLERSNA
Sbjct: 781 EGYNNNVPQSIISLEESRGKFYDQYMQKRDAKLKEDWKLQGEQKEATIKAMRDSLERSNA 840
Query: 841 EMRAKFSRSSSVPDSTYISRCAHKFPPLQSVIKDKDQGIDSFLVEEEMNSDYLXXXXXXX 900
EMRAKFSRSSSVPDSTYISRCAHKFPPLQSVIKDKDQGIDSFLVEEEMNSDYL
Sbjct: 841 EMRAKFSRSSSVPDSTYISRCAHKFPPLQSVIKDKDQGIDSFLVEEEMNSDYLSGDGSSR 900
Query: 901 XXXXXKHFSNKVACNQKKSIAPVHRHSSRTVSSGYANRRNLPDNPLAQSVPNFADLRKEN 960
KHFSNKVACNQKKSIAPVHRHSSRTVSSGYANRRNLPDNPLAQSVPNFADLRKEN
Sbjct: 901 SADSRKHFSNKVACNQKKSIAPVHRHSSRTVSSGYANRRNLPDNPLAQSVPNFADLRKEN 960
Query: 961 TKPSAGLSRAAPRTQPXXXXXXXXXXXXXXXXXXDQSRKSQSMRKNLSPGELRDATSMND 1020
TKPSAGLSRAAPRTQP DQSRKSQSMRKNLSPGELRDATSMND
Sbjct: 961 TKPSAGLSRAAPRTQPKSFIRSKSIIEESKNISKDQSRKSQSMRKNLSPGELRDATSMND 1020
Query: 1021 VIYNWAPSKISNDQVEGVFAYITHTAGSTKSFLRKGNEAHPAVGIAGFAPPMFANTYQNG 1080
VIYNWAPSKISNDQVEGVFAYITHTAGSTKSFLRKGNEAHPAVGIAGFAPPMFANTYQNG
Sbjct: 1021 VIYNWAPSKISNDQVEGVFAYITHTAGSTKSFLRKGNEAHPAVGIAGFAPPMFANTYQNG 1080
Query: 1081 XXXXXXXXXXXXXXETKDEEYESIEENLRESDFPADSDSENPGISHEFGNSDDPGSENGD 1140
ETKDEEYESIEENLRESDFPADSDSENPGISHEFGNSDDPGSENGD
Sbjct: 1081 DDDDFLDQEEDSPDETKDEEYESIEENLRESDFPADSDSENPGISHEFGNSDDPGSENGD 1140
Query: 1141 VSFPSDAPTLGGSKFNAFAGNMHDTPGEVPASWSTRPHLFAYANDNSDGDAFADSPNGSP 1200
VSFPSDAPTLGGSKFNAFAGNMHDTPGEVPASWSTRPHLFAYANDNSDGDAFADSPNGSP
Sbjct: 1141 VSFPSDAPTLGGSKFNAFAGNMHDTPGEVPASWSTRPHLFAYANDNSDGDAFADSPNGSP 1200
Query: 1201 SPWNSHTLDQITDADVSRMRKKWGSAQMPFVGPNASQQPRKDVXXXXXXXXXXXXXXXGA 1260
SPWNSHTLDQITDADVSRMRKKWGSAQMPFVGPNASQQPRKDV GA
Sbjct: 1201 SPWNSHTLDQITDADVSRMRKKWGSAQMPFVGPNASQQPRKDVTKGFKKLLKFGRKTRGA 1260
Query: 1261 DGLNDWVSASTASECDDDMEDGRDLAMGSSDDFRKSRMGYPSAYDGFVDTDVFAEQDQSL 1320
DGLNDWVSASTASECDDDMEDGRDLAMGSSDDFRKSRMGYPSAYDGFVDTDVFAEQDQSL
Sbjct: 1261 DGLNDWVSASTASECDDDMEDGRDLAMGSSDDFRKSRMGYPSAYDGFVDTDVFAEQDQSL 1320
Query: 1321 RSSIPNPPANFRLREDQLTGSSLKAPRSFFSLSTFRSKGGDARLR 1365
RSSIPNPPANFRLREDQLTGSSLKAPRSFFSLSTFRSKGGDARLR
Sbjct: 1321 RSSIPNPPANFRLREDQLTGSSLKAPRSFFSLSTFRSKGGDARLR 1365
>Os03g0861100 Conserved hypothetical protein
Length = 1256
Score = 142 bits (357), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 84/236 (35%), Positives = 120/236 (50%), Gaps = 40/236 (16%)
Query: 1 MEPDAPLDFALFQLSPRRSRCELVVSGNGRTERIASGSVKPFVAHLRXXXXXXXXXXXXX 60
M P+ LD A+FQL+P R+RC+LVV NGR E+IASG + PFVAHL+
Sbjct: 1 MRPETRLDSAVFQLTPTRTRCDLVVIANGRKEKIASGLLNPFVAHLKVAQQQIAKGGYSI 60
Query: 61 XIRLQLDRRAAWFSKGTLERFVRFVSTPEVLEMANTFDAEMSQLE-----------GARK 109
+ + + A WF++GT+ERFVRFVSTPEVLE T ++E+ Q+E G R
Sbjct: 61 TLEVDPEIDAPWFTRGTVERFVRFVSTPEVLERVTTIESEILQIEDAITGQGGDNLGLRS 120
Query: 110 IYAQXXXXXXXXXXXXXXXDI-----------------------------TKKELLRAID 140
+ D+ +K +LLR ++
Sbjct: 121 VEDYNEKLAECIGGSKTNYDLDGDKSLILYKPGIQPPPPVQNDNATQEENSKVQLLRVLE 180
Query: 141 VRLSALKQDLVTACARASSAGFNPDSVSELVLFADHFGANRLSEACNKFMSLCQRR 196
R L+++ A ARA +AGFN D++ L+ FAD FGA+RL +AC +F L +R+
Sbjct: 181 TRKIVLRKEQAMAFARAVAAGFNIDNLGFLITFADRFGASRLMKACTQFTELWRRK 236
>Os07g0445600 Conserved hypothetical protein
Length = 814
Score = 110 bits (275), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 55/110 (50%), Positives = 70/110 (63%)
Query: 1 MEPDAPLDFALFQLSPRRSRCELVVSGNGRTERIASGSVKPFVAHLRXXXXXXXXXXXXX 60
M PDA LD A+FQL+P R+R +LVV NGR E+IASG + PF+AHL+
Sbjct: 1 MRPDARLDAAVFQLTPTRTRFDLVVIVNGRKEKIASGLLNPFLAHLKVAQDQIAKGGYSI 60
Query: 61 XIRLQLDRRAAWFSKGTLERFVRFVSTPEVLEMANTFDAEMSQLEGARKI 110
+ A WF++GT+ERFVRFVSTPEVLE T ++E+ QLE A I
Sbjct: 61 TLEPSSGVGAPWFTRGTVERFVRFVSTPEVLERVTTIESEILQLEDAISI 110
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.310 0.126 0.354
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 42,862,776
Number of extensions: 1750152
Number of successful extensions: 4760
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 4753
Number of HSP's successfully gapped: 3
Length of query: 1365
Length of database: 17,035,801
Length adjustment: 113
Effective length of query: 1252
Effective length of database: 11,135,619
Effective search space: 13941794988
Effective search space used: 13941794988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 162 (67.0 bits)