BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0249600 Os07g0249600|AK067442
(382 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0249600 Dcp1-like decapping family protein 696 0.0
Os12g0156400 Dcp1-like decapping family protein 315 4e-86
Os03g0837000 Dcp1-like decapping family protein 156 3e-38
Os11g0155000 Dcp1-like decapping family protein 88 9e-18
>Os07g0249600 Dcp1-like decapping family protein
Length = 382
Score = 696 bits (1796), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/382 (91%), Positives = 348/382 (91%)
Query: 1 MAHGGGGRAKVTPNLAMDEEGTRVLNITVLQRLDPAVEDILITAGHVTLYDFDTNLNQWS 60
MAHGGGGRAKVTPNLAMDEEGTRVLNITVLQRLDPAVEDILITAGHVTLYDFDTNLNQWS
Sbjct: 1 MAHGGGGRAKVTPNLAMDEEGTRVLNITVLQRLDPAVEDILITAGHVTLYDFDTNLNQWS 60
Query: 61 RKDVEGSLFVVKRNAQPRFQFVVMNRRNTDNLVEDLLGDFEYQLQVPYIMYRNAAQEVIG 120
RKDVEGSLFVVKRNAQPRFQFVVMNRRNTDNLVEDLLGDFEYQLQVPYIMYRNAAQEVIG
Sbjct: 61 RKDVEGSLFVVKRNAQPRFQFVVMNRRNTDNLVEDLLGDFEYQLQVPYIMYRNAAQEVIG 120
Query: 121 IWFYNSQECEEVANLFSRILNAFSKATPKPKAPSIKSEFEELEAAPTLVEGPLEPQTSNI 180
IWFYNSQECEEVANLFSRILNAFSKATPKPKAPSIKSEFEELEAAPTLVEGPLEPQTSNI
Sbjct: 121 IWFYNSQECEEVANLFSRILNAFSKATPKPKAPSIKSEFEELEAAPTLVEGPLEPQTSNI 180
Query: 181 IPATTHVQEDPLSAFFSGAINVGSASGLSVAGQLNQSFGSTPLSSHAPTSISISQPPAVH 240
IPATTHVQEDPLSAFFSGAINVGSASGLSVAGQLNQSFGSTPLSSHAPTSISISQPPAVH
Sbjct: 181 IPATTHVQEDPLSAFFSGAINVGSASGLSVAGQLNQSFGSTPLSSHAPTSISISQPPAVH 240
Query: 241 HLLPSQTSSVISPDVHGGTGAVVNRSASLLNPSLFSPLTSSQTTMARTNPVAPTAPPQHP 300
HLLPSQTSSVISPDVHGGTGAVVNRSASLLNPSLFSPLTSSQTTMARTNPVAPTAPPQHP
Sbjct: 241 HLLPSQTSSVISPDVHGGTGAVVNRSASLLNPSLFSPLTSSQTTMARTNPVAPTAPPQHP 300
Query: 301 RITQQPHSAPLLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVYSPVLSREKVRD 360
RITQQPHSAPLLQ VYSPVLSREKVRD
Sbjct: 301 RITQQPHSAPLLQPFPLPTASPSPPYGTPLLQPFPPPNPSPSLASAPVYSPVLSREKVRD 360
Query: 361 ALLRLVENDDFIDLVYREIVKG 382
ALLRLVENDDFIDLVYREIVKG
Sbjct: 361 ALLRLVENDDFIDLVYREIVKG 382
>Os12g0156400 Dcp1-like decapping family protein
Length = 374
Score = 315 bits (806), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 163/261 (62%), Positives = 197/261 (75%), Gaps = 14/261 (5%)
Query: 4 GGGGRAKVTPNLAMDEEGTRVLNITVLQRLDPAVEDILITAGHVTLYDFDTNLNQWSRKD 63
G GG KVTPNLAMD EGTR+LN+TVLQRLDPAVEDILITA HVTLYDF+ LNQWSRKD
Sbjct: 11 GAGG--KVTPNLAMDAEGTRLLNLTVLQRLDPAVEDILITAAHVTLYDFNIELNQWSRKD 68
Query: 64 VEGSLFVVKRNAQPRFQFVVMNRRNTDNLVEDLLGDFEYQLQVPYIMYRNAAQEVIGIWF 123
VEGSLFVVKRN QPRFQF+VMNRRNTDNLVEDLL DFE++LQ PY++YRNAAQEV GIWF
Sbjct: 69 VEGSLFVVKRNKQPRFQFIVMNRRNTDNLVEDLLSDFEFELQPPYLLYRNAAQEVNGIWF 128
Query: 124 YNSQECEEVANLFSRILNAFSKATPKPKAPSIKSEFEELEAAPT--LVEGPLEPQTSNII 181
YN Q+C+ VA +F RILNA++K PKPK PS KSEFEELEA PT ++GPLEP +S+ +
Sbjct: 129 YNQQDCDAVAGVFGRILNAYAKVPPKPKVPSTKSEFEELEAVPTSAAIDGPLEPSSSSTV 188
Query: 182 PATTHVQEDPLSAFFSGAINVGSASGLSVAGQLNQSFGSTPLSSHAPTSISISQPPAVHH 241
++ ++ L+ +FSGA+NVG+ S + G+ +Q S SSH P I + P H
Sbjct: 189 -LVSNAPDESLTDYFSGAVNVGNVSITPMVGRTHQPIESV-ASSHVPLIIPSAAP--THQ 244
Query: 242 L-LPSQTSS-----VISPDVH 256
+ +PS +S VI +VH
Sbjct: 245 MGVPSGAASAPPLPVIDTNVH 265
>Os03g0837000 Dcp1-like decapping family protein
Length = 445
Score = 156 bits (394), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 84/166 (50%), Positives = 107/166 (64%), Gaps = 3/166 (1%)
Query: 76 QPRFQFVVMNRRNTDNLVEDLLGDFEYQLQVPYIMYRNAAQEVIGIWFYNSQECEEVANL 135
QPRFQF+VMNR+NT+NL EDLLG FEYQ+QVPYIMY NAA E+ GIWFY+ QECE+V L
Sbjct: 51 QPRFQFIVMNRKNTENLTEDLLGGFEYQVQVPYIMYHNAADEITGIWFYDPQECEQVGYL 110
Query: 136 FSRILNAFSKATPKPKAPSIKSEFEELEAAPTLV--EGPLEPQTSNIIPATTHVQEDPLS 193
FSRI AFS+ +PK K +SE+E+ E P + E L+ TS+I+ + + D LS
Sbjct: 111 FSRIQKAFSRVSPKAKVSVTESEYEKPEVVPAVPSNEDTLKQPTSSIM-LLDNAKYDFLS 169
Query: 194 AFFSGAINVGSASGLSVAGQLNQSFGSTPLSSHAPTSISISQPPAV 239
A GA VG+ + A Q N+S G S+HA Q PA+
Sbjct: 170 ALLKGAACVGATMDEASAVQSNKSVGMVHSSTHASPHAIPPQSPAI 215
>Os11g0155000 Dcp1-like decapping family protein
Length = 60
Score = 88.2 bits (217), Expect = 9e-18, Method: Composition-based stats.
Identities = 37/49 (75%), Positives = 42/49 (85%)
Query: 90 DNLVEDLLGDFEYQLQVPYIMYRNAAQEVIGIWFYNSQECEEVANLFSR 138
DNLVEDLL DFEY+LQ PY++YRNAAQEV GIWFYN +CE VA+LF R
Sbjct: 12 DNLVEDLLSDFEYELQPPYLLYRNAAQEVNGIWFYNQHDCEAVASLFGR 60
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.131 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,593,746
Number of extensions: 518116
Number of successful extensions: 2262
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 2256
Number of HSP's successfully gapped: 5
Length of query: 382
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 279
Effective length of database: 11,657,759
Effective search space: 3252514761
Effective search space used: 3252514761
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)