BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0246600 Os07g0246600|J065085F23
(347 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0246600 Protein of unknown function DUF789 family protein 441 e-124
Os03g0831300 Protein of unknown function DUF789 family protein 199 3e-51
Os01g0513400 Protein of unknown function DUF789 family protein 131 7e-31
Os01g0306900 Protein of unknown function DUF789 family protein 125 4e-29
Os01g0138500 Protein of unknown function DUF789 family protein 111 7e-25
Os10g0494000 Protein of unknown function DUF789 family protein 91 1e-18
>Os07g0246600 Protein of unknown function DUF789 family protein
Length = 347
Score = 441 bits (1135), Expect = e-124, Method: Compositional matrix adjust.
Identities = 229/317 (72%), Positives = 229/317 (72%)
Query: 31 RGGYMLSDRFYSPPHVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQKXXXXXXXX 90
RGGYMLSDRFYSPPHV QK
Sbjct: 31 RGGYMLSDRFYSPPHVRRQQMLLLQQQQLLQGQRPPSLSPSPATAPRAARQKPLPSPSPP 90
Query: 91 XXXXXXXXXXRQKEVERRVDAVVQSKPSVSPLPSSADVKXXXXXXXXXXXXXXXXXXXXG 150
RQKEVERRVDAVVQSKPSVSPLPSSADVK G
Sbjct: 91 PPPPAPAEAARQKEVERRVDAVVQSKPSVSPLPSSADVKRPPAAESAPEPARAAEEEAAG 150
Query: 151 NLERFLSSTTPSVPVQYLPKTSMRGWRSGDAMNSSPYFCLGDLWEAFNEWSFYGAGVPVV 210
NLERFLSSTTPSVPVQYLPKTSMRGWRSGDAMNSSPYFCLGDLWEAFNEWSFYGAGVPVV
Sbjct: 151 NLERFLSSTTPSVPVQYLPKTSMRGWRSGDAMNSSPYFCLGDLWEAFNEWSFYGAGVPVV 210
Query: 211 LNGKDSVIQYYVPYLSAIQLYADPSKHSTRIRHPWXXXXXXXXXXXXXXXXGTDADQLRG 270
LNGKDSVIQYYVPYLSAIQLYADPSKHSTRIRHPW GTDADQLRG
Sbjct: 211 LNGKDSVIQYYVPYLSAIQLYADPSKHSTRIRHPWEESDEESMDTSSESSSGTDADQLRG 270
Query: 271 LENGGFQREDSESHFPSTRPLFEYLEKDPPYGREPLTDKARAPPSFDKRKFAICMYCFYA 330
LENGGFQREDSESHFPSTRPLFEYLEKDPPYGREPLTDKARAPPSFDKRKFAICMYCFYA
Sbjct: 271 LENGGFQREDSESHFPSTRPLFEYLEKDPPYGREPLTDKARAPPSFDKRKFAICMYCFYA 330
Query: 331 YYKCPIRYQFLQVNFRS 347
YYKCPIRYQFLQVNFRS
Sbjct: 331 YYKCPIRYQFLQVNFRS 347
>Os03g0831300 Protein of unknown function DUF789 family protein
Length = 312
Score = 199 bits (505), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 94/169 (55%), Positives = 118/169 (69%), Gaps = 8/169 (4%)
Query: 150 GNLERFLSSTTPSVPVQYLPKTSMRGWRSGDAMNSSPYFCLGDLWEAFNEWSFYGAGVPV 209
GNLERFL+STTPSVP QYLPKTS++ WR+GD N+SPYFCL DLWE+F EWS YGAGVP+
Sbjct: 117 GNLERFLTSTTPSVPFQYLPKTSLKMWRTGDCTNTSPYFCLEDLWESFREWSAYGAGVPL 176
Query: 210 VLNGKDSVIQYYVPYLSAIQLYADPSKHSTRIRHPWXXXXXXXXXXXXXXXXGTDADQLR 269
+LNG DSV QYYVPYLSAIQLYADPS+ +R R TD D+LR
Sbjct: 177 LLNGSDSVTQYYVPYLSAIQLYADPSRSVSRTRRLGDESDGEYLDASSESSSETDVDRLR 236
Query: 270 --------GLENGGFQREDSESHFPSTRPLFEYLEKDPPYGREPLTDKA 310
G+ NG + +D++ + ++ P+F+Y+E+DPP+ REPLTDK
Sbjct: 237 VSSVEATHGMANGSLRTDDADGYASASSPIFQYMERDPPFCREPLTDKV 285
>Os01g0513400 Protein of unknown function DUF789 family protein
Length = 369
Score = 131 bits (330), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 76/167 (45%), Positives = 98/167 (58%), Gaps = 7/167 (4%)
Query: 150 GNLERFLSSTTPSVPVQYLPKT--SMRGWRSGDA---MNSSPYFCLGDLWEAFNEWSFYG 204
GNLERF+++ TP VP Q+ K + RGWR +P+F L D+WEA+ EWS YG
Sbjct: 67 GNLERFVAAVTPFVPAQFPSKMQRAARGWRGCGVDAEREEAPHFFLRDVWEAYREWSAYG 126
Query: 205 AGVPVVLNGKDSVIQYYVPYLSAIQLYADPS--KHSTRIRHPWXXXXXXXXXXXXXXXXG 262
AGVP+VL+G D V+QYYVPYLSAIQLY DP+ + S+ RH
Sbjct: 127 AGVPLVLDGCDGVVQYYVPYLSAIQLYGDPAVLRLSSGPRHIMDDSDGEYHDSSSDASSD 186
Query: 263 TDADQLRGLENGGFQREDSESHFPSTRPLFEYLEKDPPYGREPLTDK 309
+ +++ L GF +D ES R LF+YLE D P+ REPLTDK
Sbjct: 187 YELGRVKHLTQEGFSSDDGESGDLHGRLLFQYLEFDSPFCREPLTDK 233
>Os01g0306900 Protein of unknown function DUF789 family protein
Length = 357
Score = 125 bits (315), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 74/168 (44%), Positives = 93/168 (55%), Gaps = 17/168 (10%)
Query: 151 NLERFLSSTTPSVPVQYLPKTSMRGWRSGDAMNSSPYFCLGDLWEAFNEWSFYGAGVPVV 210
NLE F++ST VP LP+TS G A + PY+ L DLWEAF EWS YGAGVP++
Sbjct: 58 NLECFIASTAVRVPAHRLPRTSSSSRERG-AAGAPPYYELADLWEAFAEWSAYGAGVPLL 116
Query: 211 LNGKDSVIQYYVPYLSAIQLYAD--PSKHSTRIRHPWXXXXXXXXXXXXXXXXGTDADQL 268
LNG D V+QYYVP+LSAIQL+A PS S R+ +D + L
Sbjct: 117 LNGTDGVVQYYVPFLSAIQLFAARPPSSTSGRL------GEDSDGESAQDMSSESDHEHL 170
Query: 269 R--------GLENGGFQREDSESHFPSTRPLFEYLEKDPPYGREPLTD 308
R + GF +DSES P+F+Y+E D PYGR+PL D
Sbjct: 171 RCRCLVNSISADQDGFSSDDSESGNQELYPVFQYMEHDAPYGRQPLAD 218
>Os01g0138500 Protein of unknown function DUF789 family protein
Length = 335
Score = 111 bits (278), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 70/183 (38%), Positives = 90/183 (49%), Gaps = 31/183 (16%)
Query: 151 NLERFLSSTTPSVPVQYLP-KTSMRGWRSGDAMNSSPYFCLGDLWEAFNEWSFYGAGVPV 209
NLE FL +TTP VP K SM GW+ D N+ P+F LGDLW+ F E S YG VP+
Sbjct: 21 NLELFLEATTPVVPTTACSSKKSMNGWKQSDEENALPFFSLGDLWDGFRESSAYGIAVPI 80
Query: 210 VLNG-KDSVIQYYVPYLSAIQLYADPSKHSTRIRHPWXXXXXXXXXXXXXXXXGTDADQL 268
VLNG D V+QYYVPYLSAIQLY R+R + T ++++
Sbjct: 81 VLNGCSDGVVQYYVPYLSAIQLYG-------RLRRHFYHSRPSGEDSDGDYCQDTGSEEM 133
Query: 269 RGLEN-------GGFQREDSESH---------------FPSTRPLFEYLEKDPPYGREPL 306
LE+ F +D+ + +FE+LE +PPY REPL
Sbjct: 134 SDLEHDSCPSSTDAFSVQDTTCETSTSEASSDESESTRISHEQLIFEFLESEPPYQREPL 193
Query: 307 TDK 309
DK
Sbjct: 194 ADK 196
>Os10g0494000 Protein of unknown function DUF789 family protein
Length = 318
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 80/172 (46%), Gaps = 23/172 (13%)
Query: 151 NLERFLSSTTPSVPVQYLPKTSMR----GWRSGDAMNSSPYFCLGDLWEAFNEWSFYGAG 206
NL+ FL TTP+V LPK + R W + M+S YF L DLWE + EWS YGAG
Sbjct: 20 NLQCFLDCTTPAVDTHLLPKANGRFSSDSWHHAE-MDSVEYFNLADLWEQYYEWSAYGAG 78
Query: 207 VPVVLNGKDSVIQYYVPYLSAIQLYADPSKHSTRIRHPWXXXXXXXXXXXXXXXXGTDAD 266
V L G + V+QYYVPYLS IQLY + ++ ++R D D
Sbjct: 79 TTVQLYGGERVVQYYVPYLSGIQLYTNKAQTASR----------SFGEDNGMDYWSDDED 128
Query: 267 QLRGLENGGFQREDSESHFPST--------RPLFEYLEKDPPYGREPLTDKA 310
+ + EDS + + FE+ E PYGR PL DK
Sbjct: 129 NEKMSRSWSSTSEDSLFNCDAISGNRKRHGHMYFEFFEVCSPYGRIPLIDKV 180
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.137 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,195,966
Number of extensions: 347171
Number of successful extensions: 630
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 619
Number of HSP's successfully gapped: 6
Length of query: 347
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 245
Effective length of database: 11,709,973
Effective search space: 2868943385
Effective search space used: 2868943385
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)