Os10g0494000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF789 family protein.
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Os10g0494000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF789 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 78.45 | 0.416 | 12.6 | -0.603 | 1.7 | 0.883 | -1.38 | -0.307 | 0.174 | 2.29 | 20.1 | 752 | 2.93 | 0.917 |
| 78.64 | 0.413 | 12.6 | -0.528 | 1.71 | 0.871 | -1.34 | -- | 0.197 | 2.33 | 20.12 | 757 | 2.95 | 0.85 |
| 85.08 | 0.43 | 12.6 | -0.53 | 1.71 | 0.913 | -- | -0.0866 | 0.184 | 2.2 | 20.12 | 757 | 2.97 | 0.85 |
| 85.1 | 0.43 | 12.6 | -0.503 | 1.72 | 0.915 | -- | -- | 0.194 | 2.18 | 20.15 | 759 | 2.96 | 0.783 |
| 198.91 | 0.657 | 12.7 | -0.336 | -- | 1.19 | -- | 0.0761 | 0.166 | -- | 14.79 | 1725 | 2.56 | 1 |
| 121.53 | 0.517 | 12.5 | -0.352 | 1.78 | -- | -1.77 | -- | 0.341 | 4.05 | -- | -- | -- | -- |
| 130.45 | 0.535 | 12.5 | -0.33 | 1.77 | -- | -- | -- | 0.351 | 4.1 | -- | -- | -- | -- |
| 186.63 | 0.636 | 12.5 | 0.0309 | -- | 1.43 | -- | -- | 0.338 | -- | -0.5985 | 3174 | 1.7 | 1.68 |
| 91.51 | 0.446 | 12.6 | -- | 1.7 | 0.87 | -- | -- | 0.261 | 2.26 | 20.2 | 758 | 3.09 | 0.533 |
| 301.13 | 0.811 | 12.5 | -0.259 | -- | -- | -- | -- | 0.399 | -- | -- | -- | -- | -- |
| 133.32 | 0.54 | 12.5 | -- | 1.77 | -- | -- | -- | 0.388 | 4.1 | -- | -- | -- | -- |
| 171.93 | 0.611 | 12.5 | -- | -- | 1.65 | -- | -- | 0.347 | -- | -86.35 | 3168 | 0.0607 | 4.6 |
| 302.89 | 0.812 | 12.5 | -- | -- | -- | -- | -- | 0.427 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 80.48 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 1 |
| 2 | 81.89 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 4 |
| 3 | 82.31 | temperature | 20 | 720 | > th | dose independent | rect. | 2 | 3 |
| 4 | 82.33 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 1 |
| 6 | 82.63 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 2 |
| 23 | 85.69 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 4 |
| 35 | 86.42 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 10 |
| 46 | 86.81 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 12 |
| 49 | 87.01 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 10 |
| 52 | 87.05 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 7 |
| 69 | 87.39 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 10 |
| 171 | 89.52 | temperature | 25 | 720 | < th | dose dependent | sin | 7 | NA |
| 242 | 90.55 | temperature | 25 | 270 | < th | dose independent | rect. | 5 | 7 |
| 313 | 91.70 | temperature | 20 | 720 | > th | dose independent | sin | 6 | NA |
| 360 | 92.18 | temperature | 15 | 720 | > th | dose dependent | sin | 8 | NA |
| 415 | 92.91 | temperature | 20 | 720 | < th | dose independent | sin | 6 | NA |
| 521 | 94.45 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 17 |
| 534 | 94.60 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 18 |
| 771 | 96.89 | temperature | 20 | 720 | > th | dose independent | rect. | 17 | 20 |