FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0138500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF789 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.21 (0.0452) R2 : 0.77
β1 : -0.878 (0.165) R2dD : 0.015 R2D : 0.0251
β2 : 3.02 (0.115) R2dC : 0.399 R2C : 0.58
β3 : -2.02 (0.12) R2dE : 0.172 R2E : 0.354
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.316 (0.0975) R2dN8 : 0.00742 R2N8 : -0.0115
σ : 0.839
deviance : 324.19
__
_____
C
peak time of C : 10.6
E
wheather : humidity
threshold : 81.44
memory length : 16
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
318.89 0.839 6.21 -0.81 2.98 -2.05 -1.31 -0.411 -0.311 10.5 81.07 14 -- --
319.12 0.832 6.21 -0.849 2.99 -2.08 -1.11 -- -0.332 10.6 81.46 16 -- --
324.17 0.839 6.21 -0.881 3 -2.02 -- 0.27 -0.311 10.6 81.37 13 -- --
324.19 0.839 6.21 -0.878 3.02 -2.02 -- -- -0.316 10.6 81.44 16 -- --
727.88 1.26 6.29 -1.01 -- -3.19 -- 0.216 -0.345 -- 73.63 8 -- --
441.44 0.985 6.13 -1.06 3.85 -- -0.303 -- 0.0297 11.9 -- -- -- --
441.84 0.984 6.13 -1.07 3.85 -- -- -- 0.0285 11.9 -- -- -- --
725.81 1.26 6.29 -1.02 -- -3.19 -- -- -0.332 -- 72.58 5 -- --
344.15 0.864 6.2 -- 3.03 -2.06 -- -- -0.257 10.6 82 16 -- --
1374.51 1.73 6.22 -1.18 -- -- -- -- -0.0219 -- -- -- -- --
471.85 1.02 6.11 -- 3.86 -- -- -- 0.147 11.9 -- -- -- --
753.07 1.28 6.26 -- -- -3.21 -- -- -0.228 -- 73.01 4 -- --
1411.4 1.75 6.19 -- -- -- -- -- 0.109 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 313.83 humidity 80 10 > th dose dependent rect. 18 22
5 316.51 humidity 80 10 > th dose dependent rect. 1 23
10 316.73 humidity 80 30 > th dose dependent rect. 7 23
15 318.93 humidity 80 10 > th dose dependent rect. 9 23
23 319.60 humidity 80 10 > th dose dependent no NA NA
25 320.01 humidity 80 10 > th dose dependent rect. 13 23
28 320.37 humidity 80 10 > th dose dependent rect. 15 23
75 326.20 humidity 80 10 > th dose dependent rect. 21 23
102 332.04 humidity 80 10 > th dose dependent sin 6 NA
109 332.34 humidity 90 30 < th dose independent rect. 21 23
142 334.72 humidity 80 10 > th dose dependent rect. 1 15
227 339.52 humidity 80 10 > th dose dependent rect. 3 23
238 340.11 humidity 90 30 < th dose independent rect. 3 23
241 340.32 humidity 90 30 < th dose independent no NA NA
256 340.96 humidity 90 30 < th dose independent rect. 5 23
275 341.78 humidity 70 30 > th dose dependent rect. 19 11
282 342.05 humidity 80 10 > th dose dependent rect. 18 14
283 342.06 humidity 50 10 > th dose dependent sin 9 NA
288 342.33 humidity 90 30 < th dose independent sin 5 NA
297 342.63 humidity 90 30 < th dose independent rect. 23 20
402 345.92 humidity 90 30 > th dose independent rect. 24 22
416 346.26 humidity 90 30 < th dose independent rect. 11 23
432 346.78 humidity 90 30 < th dose independent rect. 23 11
436 346.89 humidity 90 90 < th dose independent rect. 21 12
475 348.03 humidity 90 30 > th dose independent sin 6 NA
556 349.61 humidity 90 30 < th dose independent rect. 13 23
597 350.59 humidity 90 30 > th dose independent rect. 19 21
616 350.82 humidity 90 30 > th dose independent rect. 19 19
629 351.22 humidity 90 30 < th dose independent rect. 15 23
778 353.49 humidity 90 30 > th dose independent rect. 11 21
780 353.49 humidity 90 90 < th dose dependent rect. 22 11
849 354.27 humidity 90 30 > th dose independent rect. 24 16
862 354.47 humidity 90 30 > th dose independent rect. 24 14
894 354.95 humidity 90 30 > th dose independent rect. 21 23
898 355.02 humidity 90 30 > th dose independent no NA NA
901 355.02 humidity 90 30 > th dose independent rect. 13 23
902 355.02 humidity 90 30 > th dose independent rect. 15 23
963 355.80 humidity 90 30 > th dose independent rect. 7 23
996 356.17 humidity 90 10 < th dose independent rect. 5 14