BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0195300 Os07g0195300|Os07g0195300
(432 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0195300 Cyclin-like F-box domain containing protein 837 0.0
Os07g0242600 Cyclin-like F-box domain containing protein 162 3e-40
Os07g0196300 Cyclin-like F-box domain containing protein 158 6e-39
Os07g0198000 149 5e-36
Os07g0242400 Cyclin-like F-box domain containing protein 148 7e-36
Os07g0207900 120 1e-27
Os07g0183700 69 7e-12
Os07g0195700 66 5e-11
>Os07g0195300 Cyclin-like F-box domain containing protein
Length = 432
Score = 837 bits (2161), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/432 (94%), Positives = 408/432 (94%)
Query: 1 MASRSQCAKVSXXXXXXXXXXXXXXXXXXXXXXXXDVLFEVLLRLGPKDVCRLRGVCRSW 60
MASRSQCAKVS DVLFEVLLRLGPKDVCRLRGVCRSW
Sbjct: 1 MASRSQCAKVSGEAGTTASPSAAGGGEGGGAALPADVLFEVLLRLGPKDVCRLRGVCRSW 60
Query: 61 RALTTDATFVAAHAARHRGPLLAGGVLDFDVFPSVDVLLMDLSGSVVKRIRHAATHLVLP 120
RALTTDATFVAAHAARHRGPLLAGGVLDFDVFPSVDVLLMDLSGSVVKRIRHAATHLVLP
Sbjct: 61 RALTTDATFVAAHAARHRGPLLAGGVLDFDVFPSVDVLLMDLSGSVVKRIRHAATHLVLP 120
Query: 121 TTNLDLLCVTEVYTCRATLLNPITGAAVHLPEPLSTPHSLRGRSLSDFDGSFKYGRDSNG 180
TTNLDLLCVTEVYTCRATLLNPITGAAVHLPEPLSTPHSLRGRSLSDFDGSFKYGRDSNG
Sbjct: 121 TTNLDLLCVTEVYTCRATLLNPITGAAVHLPEPLSTPHSLRGRSLSDFDGSFKYGRDSNG 180
Query: 181 DYKVLRVLTDCHNKQFPEQLFEILSLDESSRYHMRWRAKKALPMCVRRDAIGGVVINGVV 240
DYKVLRVLTDCHNKQFPEQLFEILSLDESSRYHMRWRAKKALPMCVRRDAIGGVVINGVV
Sbjct: 181 DYKVLRVLTDCHNKQFPEQLFEILSLDESSRYHMRWRAKKALPMCVRRDAIGGVVINGVV 240
Query: 241 YFLLDGRPNGVKNAHRESYEMDHMALFDLCSERWISYLEGPMATHPEMNNIDEILPEPLE 300
YFLLDGRPNGVKNAHRESYEMDHMALFDLCSERWISYLEGPMATHPEMNNIDEILPEPLE
Sbjct: 241 YFLLDGRPNGVKNAHRESYEMDHMALFDLCSERWISYLEGPMATHPEMNNIDEILPEPLE 300
Query: 301 MSVYQNLSLSELSGALVVAQYTDYRSAEIKSYVDLWYLMDSEKQIWEKKYRIVLEMDTWD 360
MSVYQNLSLSELSGALVVAQYTDYRSAEIKSYVDLWYLMDSEKQIWEKKYRIVLEMDTWD
Sbjct: 301 MSVYQNLSLSELSGALVVAQYTDYRSAEIKSYVDLWYLMDSEKQIWEKKYRIVLEMDTWD 360
Query: 361 TEHIFPHAHPSLILDDGRILIYITVHLANFEGQYTRRVMRLYDPETDTLGSDLVDQNLHH 420
TEHIFPHAHPSLILDDGRILIYITVHLANFEGQYTRRVMRLYDPETDTLGSDLVDQNLHH
Sbjct: 361 TEHIFPHAHPSLILDDGRILIYITVHLANFEGQYTRRVMRLYDPETDTLGSDLVDQNLHH 420
Query: 421 STWRLSYISFHI 432
STWRLSYISFHI
Sbjct: 421 STWRLSYISFHI 432
>Os07g0242600 Cyclin-like F-box domain containing protein
Length = 397
Score = 162 bits (411), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 133/385 (34%), Positives = 201/385 (52%), Gaps = 45/385 (11%)
Query: 36 DVLFEVLLRLGPKDVCRLRGVCRSWRALTTDATFVAAHAARHRGPLLAGGVLDFDVFPSV 95
+VLF+VL+RL K++CRLR VCR WR+LT+D F+ H A HR D
Sbjct: 28 EVLFDVLVRLPAKELCRLRIVCRPWRSLTSDPLFMKTHVAHHRETFFLASFKD----DET 83
Query: 96 DVLLMDLSGSVVKRIRHAATHLVLPTTNLDLLCV-TEVYTCRATLLNPITGAAVHLPEPL 154
+ +MD +G+V+K+I A H VL T LDL+CV T +C +LNP+TG +LP+
Sbjct: 84 HIHIMDFAGNVIKQIGIPAGHKVL-CTRLDLVCVATNKNSCH--VLNPVTGDVYNLPKSP 140
Query: 155 STPHSLRGRSLSDFDGSFKYGR-DSNGDYKVLRVLTDCHNKQFPE----QLFEILSLDES 209
+ H+ F SF +G S G+YKVLR+ + F + QL E++++
Sbjct: 141 AEEHTYHVNLRKPFT-SFAFGHVASTGEYKVLRMF---NRPGFTDLGIPQLCEVITVKGG 196
Query: 210 SRYHMRWRAKKALPMCVR-RDAIGGVVINGVVYFLLDGRPNG-VKNAHRESYEMDHMALF 267
+ RWR K++ V + A GVV+NGVVYFL+D + + D + F
Sbjct: 197 TG-QARWRGKQSREFFVECQKANSGVVVNGVVYFLIDSVYDSMIIGGDGAGIHPDFICSF 255
Query: 268 DLCSERWISYLEGPMATH--PEMNNIDEILPEPLEMSVYQNLSLSELSGALVVAQYTDYR 325
DL E W ++GP++ + +M+ DE + +++ LSL+EL G LV+ + YR
Sbjct: 256 DLEVEEWREDIQGPISRNFVYDMDFPDEYI------AIWDQLSLAELKGYLVLVYHQSYR 309
Query: 326 SAEIKSYVDLWYLMDSEKQIWEKKYRIVLEMDTWDTEHIFPHAHPSLILDDGRILIYITV 385
S S +DLWYL+D E + W K+Y I +E E P L+LDDGRI++++
Sbjct: 310 S----STIDLWYLIDYETRTWIKQYSIQIESFVPVREC---KVKPLLVLDDGRIVVWLG- 361
Query: 386 HLANFEGQYTRRVMRLYDPETDTLG 410
+ ++ +YDP T T
Sbjct: 362 ---------STGLLLIYDPRTSTFA 377
>Os07g0196300 Cyclin-like F-box domain containing protein
Length = 404
Score = 158 bits (400), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 127/363 (34%), Positives = 192/363 (52%), Gaps = 43/363 (11%)
Query: 36 DVLFEVLLRLGPKDVCRLRGVCRSWRALTTDATFVAAHAARHRGPLLA--------GGVL 87
D LFE++LRL +DVCRLR VCRSWRA+ +D FV AHA+RH GP +A GG
Sbjct: 27 DALFEIMLRLPARDVCRLRAVCRSWRAVASDRAFVDAHASRHPGPYVAACFSDEADGGDG 86
Query: 88 DFDVFPSVDVLLMDLSGSVVKRIRHAATHLVLPTTNLDLLCVTEVYT-CRATLLNPITGA 146
D + VD++ + SG +VK I + + T LDL+C+ E + T+L+P+TGA
Sbjct: 87 D-ESCGGVDIVDLS-SGDIVKTIYTEVSGSRVQRTRLDLVCLVEGPSPLDVTVLDPVTGA 144
Query: 147 AVHLPEPLSTPHS---LRGRSLSDFDGSFKYGR-DSNGDYKVLRVLTDCHNKQFPEQLFE 202
+ +S + GR + + S +G+ S G+YKV+R+L + P +L+E
Sbjct: 145 TYIPAKSISADNKDLLSSGRLIME---SCAFGKVPSTGEYKVVRLLGSGN----PCELYE 197
Query: 203 ILSLDESSRYHMRWRAKKA--LPMCVRRDAIGGVVINGVVYFLLDGRPNGVKNAHRESYE 260
+ +S ++WRA + LP+C + + VVINGV YFLLD N
Sbjct: 198 CEIMTVNSAGALQWRAIQGPQLPVCSSNN-MRSVVINGVAYFLLDYSRLYCSNDGL-LIR 255
Query: 261 MDHMALFDLCSERWISYLEGPMATHPEMNNIDEILPEPLEMSVYQNLSLSELSGALVVAQ 320
++ FDL +E W+ L GP P D I+ + + + LSL++L+G+LV+
Sbjct: 256 PGNIVPFDLETEEWMGILNGP---KPVARGRDMIVISS-TLEIMEPLSLADLNGSLVMVH 311
Query: 321 YTDYRSAEIKSYVDLWYLMDSEKQIWEKKYRIVLEMDTWDTEHIFPHAHPSLILDDGRIL 380
A S +DLW+L D E+ +W KKY I D E+ +A+P L+LDD +I+
Sbjct: 312 ------AVYGSPMDLWFLSDLEQGLWVKKYSI-------DFEYYNNNAYPLLLLDDEKIV 358
Query: 381 IYI 383
+
Sbjct: 359 FLL 361
>Os07g0198000
Length = 420
Score = 149 bits (375), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 135/373 (36%), Positives = 186/373 (49%), Gaps = 50/373 (13%)
Query: 36 DVLFEVLLRLGPKDVCRLRGVCRSWRALTTDATFVAAHAARHRGPLL--AGGVLDFDVFP 93
D++ EVLLRL K R R VCR WRA +D FVAAHAAR RG LL G
Sbjct: 35 DMVREVLLRLPAKAAARFRAVCRPWRATLSDPRFVAAHAAR-RGALLVATGAPCRTSRGS 93
Query: 94 SVDVLLMDLSGSVVKRIRHAATHLVLPTTNLDLLCVTEVYTCRATLLNPITGAAVHLPEP 153
V L+ L+G VV+R R L L T DL CV RA +L+P+TGA P P
Sbjct: 94 GGHVDLVGLAGDVVRRTRAEEGVLELSTCG-DLACVVGTDR-RARVLHPVTGAGADDPLP 151
Query: 154 LSTPHSLR---GRSLSDFDGSF--KYGR-DSNGDYKVLRVLTDCHNKQFPEQLFEILSLD 207
+ G L + +F +GR S G+YKVLRV + + + EQL E+L+LD
Sbjct: 152 HDLAEENKPWAGWRLEERFHAFTHAFGRASSTGEYKVLRVASLSPDLRV-EQLVEVLALD 210
Query: 208 ESSRYH--MRWRAKKALPMCVRRDAIGGV-VINGVVYFLLDGRPNGVKNAHRESYEMDHM 264
+ R H RWR P + + G+ V+ GVV+FL P + ++ H
Sbjct: 211 RAGRAHAGARWRGMPRPPFHLAGASNAGMAVVAGVVHFLAVDIPLPFLPFEHDDDDIHHG 270
Query: 265 AL--FDLCSERWISYLEGPMATHPEMNNIDEILPEPLEMSVYQNLSLSELSGALVVAQYT 322
A+ FDL +E+W L GP+ H + D L PL L+L+EL G LV
Sbjct: 271 AIARFDLDTEQWRPLLRGPLNIHQIQQDND--LSPPL-------LTLTELKGFLVTVHRD 321
Query: 323 DYRSAEIKSYVDLWYLMDSEKQIWEKKYRIVLEMDTWDTEHIFP---HAHPSLILDD--- 376
RS + S +DLW+L+DSE++ W K+Y+I + H+ P +AHP L+LD+
Sbjct: 322 --RSHQ-SSSMDLWFLIDSEEETWVKEYKIQI--------HLRPREFYAHPLLVLDERMI 370
Query: 377 -------GRILIY 382
GR+++Y
Sbjct: 371 VFCVRPKGRVMVY 383
>Os07g0242400 Cyclin-like F-box domain containing protein
Length = 394
Score = 148 bits (374), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 114/375 (30%), Positives = 185/375 (49%), Gaps = 61/375 (16%)
Query: 48 KDVCRLRGVCRSWRALTTDATFVAAHAARHRGPLLAGGVLDFDVFPS-VDVLLMDLSGSV 106
K +CRLR VCRSW + TTD F+AA+AA H PLLA + D FPS V L+DLSG+V
Sbjct: 39 KPICRLRAVCRSWLSFTTDRLFLAAYAAVHPHPLLA---VLVDSFPSRCCVDLVDLSGNV 95
Query: 107 VKRIRHAATHLVLPTTNLDLLCVTEVYTCRATLLNPITGAAVHLPEPLSTPHSLRGRSLS 166
V+ I + T + D + V + R ++L+P TG+ LP ++ R
Sbjct: 96 VEEILGVGGECRVLTASYDRVLVAGEHH-RVSVLDPATGSVSALPFGIAEDMVRRNGMRP 154
Query: 167 DFDGSFKYGR-DSNGDYKVLRVLTDCHNKQFPEQLFEILSLDESSRYHMRWRAKKALPMC 225
+ F +G+ +S G+YK+LR+L D + + + E+ ++ + + RWR ++ P
Sbjct: 155 AW---FAFGQTNSTGEYKLLRILEDLEDGYEADPVCEVFAIGD---MNGRWRKMESPPGY 208
Query: 226 VRRDAIGGVVINGVVYFLLDGRPNGVKNAHRESYEMDH--------MALFDLCSERWISY 277
+ GVV G YF LD ++MD + FDL +E+W +
Sbjct: 209 LDPSCTNGVVFEGAAYFFLD------------HWQMDPSYYFATGCIPSFDLATEQWSTA 256
Query: 278 LEGPMATHPEMNNIDEILPEPLEMSVYQNLS----LSELSGALVVAQYTDYRSAEIKSYV 333
L+GP ++ IL E Y +L+ L++L G L A + D SA V
Sbjct: 257 LQGP---------VNRILEEANGTLNYADLTDRLMLAQLEGTLCTAHFNDQISA-----V 302
Query: 334 DLWYLMDSEKQIWEKKYRIVLEMDTWDTEHIFPHAHPSLILDDGRILIYITVHLANFEGQ 393
DLW+L+D E +W K+YRI +E + P L+ D+G +++++ +
Sbjct: 303 DLWFLVDFENGMWSKEYRINVEF---AFDGFGDGVQPLLVTDEGNVVLWVQIG------- 352
Query: 394 YTRRVMRLYDPETDT 408
++ ++ +Y+P T+T
Sbjct: 353 -SKGMVWIYNPVTNT 366
>Os07g0207900
Length = 403
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 121/380 (31%), Positives = 173/380 (45%), Gaps = 48/380 (12%)
Query: 36 DVLFEVLLRLGPKDVCRLRGVCRSWRALTTDATFVAAHAARHRGPLL---AGGVLDFDVF 92
D+L VLLRL + CRLR VCR WRA+ +D F AAHAARH P L A LD
Sbjct: 35 DLLNAVLLRLPARPACRLRAVCRPWRAVLSDPRFAAAHAARHPDPHLVVAACDRLDAGGI 94
Query: 93 PSVDVLLMDLSGSVVKRIRHAATHLVLPTTNLDLLCVTEVYTCRATLLNPITGAAVHLPE 152
VDV L+ SG V KR+ P D V+ A L+ V
Sbjct: 95 ELVDVYLVGASGDVAKRV---------PAGRCDTDAVSSARDGVALLVGNDRRLRVLDAA 145
Query: 153 PLSTPHSLRGRSLSDFDGSFKYGR--DSNGDYKVLRVLTDCHNKQFPEQLFEILSLDESS 210
+ + + SF GR S+G++KVLR+ T H + Q+ +L+L +
Sbjct: 146 ASAAVSLVPDGEHHPINCSFTLGRAASSSGEHKVLRIGTVVHGE---PQVCAVLTLAVAG 202
Query: 211 --RYHMRWRAKKALPMCVRRDAIGGVVINGVVYFLLDGRPNGVKNAHRESYEMDHMALFD 268
+ RWR + P+ VR V GV YFLL R +Y D +A FD
Sbjct: 203 GRGQNARWREAPSPPLVVRTRRGDVAVAGGVAYFLL-----------RRAYLADRIAAFD 251
Query: 269 LCSERWISYLEGPMATHPEMNNIDEILPEPLEMSVYQNLSLSELSGALVVAQYTDYRSAE 328
L +E+W L G P + P+ ++L+EL G+LVVA D+R+A
Sbjct: 252 LEAEQWRPALVG----GPPLAAWRPTRPD------RPRVTLAELGGSLVVA-IDDHRAAT 300
Query: 329 IKSYVDLWYLMDS--EKQIWEKKYRIVLEMDTWDTEHIFPHAHPSLILDDGRILIYITVH 386
+ DLW+L+ + +Q W K+Y + + A P ++LDDGRI+ ++
Sbjct: 301 L----DLWFLLAAGDGEQHWSKQYTVTMPYHRRPWRCDGERAEPVVVLDDGRIVFWVWAG 356
Query: 387 LANFEGQYTRRVMRLYDPET 406
+ ++ VMR+YDP T
Sbjct: 357 GSGGT-RHGGGVMRVYDPIT 375
>Os07g0183700
Length = 361
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 87/194 (44%), Gaps = 26/194 (13%)
Query: 215 RWRAKKALPMCVRRDAIGGVVINGVVYFLLDGRPNGVKNAHRESYEMDHMALFDLCSERW 274
+WR P + GVV G YFLL + A M FDL +E+W
Sbjct: 164 QWRKADNPPDYLDWSFTNGVVYRGAAYFLLS---YFNRVAASSLIRTGCMPSFDLETEQW 220
Query: 275 ISYLEGPMAT--HPEMNNIDEILPEPLEMSVYQNLSLSELSGALVVAQYTDYRSAEIKSY 332
L+GP T H ++ + +L L++L G L A + D+ S
Sbjct: 221 SMTLQGPTKTILHDANGTVNY-------TGLAGHLMLAQLKGTLSAAHWKDH-----VSI 268
Query: 333 VDLWYLMDSEKQIWEKKYRIVLEMDTWDTEHIFPHAHPSLILDDGRILIYITVHLANFEG 392
VDLW+L D +K W K+YRI ++ + T ++ HP ++ D+G ++ ++
Sbjct: 269 VDLWFLTDFDKGTWSKEYRINVDFVFFGT-GVYVKVHPLVVTDEGEVVFWLQAG------ 321
Query: 393 QYTRRVMRLYDPET 406
T+ ++++Y+P T
Sbjct: 322 --TKAIVQIYNPVT 333
>Os07g0195700
Length = 294
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 104/219 (47%), Gaps = 34/219 (15%)
Query: 199 QLFEILSLDESS-RYHMRWRAKKALPMCVR-RDAIGGVVINGVVYFLLDGRPNG-VKNAH 255
QL E+ ++ + + H WR K++ V + A GVV+NGVVYFL+D + + +
Sbjct: 14 QLCEVFTVKGGTGQGHAHWRGKQSRQFFVEMQKANSGVVVNGVVYFLMDALYDAMIISGL 73
Query: 256 RESYEMDHMALFDLCSERWISYLEGPMATHPEMNNIDEILPEPLEMSVYQNLSLSELSGA 315
D + FDL +E W ++GP+++ + + P+ S++ L L+EL G
Sbjct: 74 GAGIHPDFIFSFDLETEEWREDIQGPISSSFVFDG--DFDPQEY-FSIWHQLCLAELKGY 130
Query: 316 LVVAQYTDYRSAEIKSYVDLWYLMDSEKQIWEKKYRIVLEMDTWDTEHIFP----HAHPS 371
LV Q S +DLW+L D E + W K+Y I TE P P
Sbjct: 131 LVHHQ-------RFCSTMDLWFLTDYETRAWVKEYSI-------QTESFIPVLEYDVKPL 176
Query: 372 LILDDGRILIYITVHLANFEGQYTRRVMRLYDPETDTLG 410
L+LDDGRILI++ + ++ +YDP T +
Sbjct: 177 LVLDDGRILIWLG----------STGLLLIYDPRTSSFA 205
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.138 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,588,812
Number of extensions: 618240
Number of successful extensions: 1581
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 1553
Number of HSP's successfully gapped: 9
Length of query: 432
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 328
Effective length of database: 11,605,545
Effective search space: 3806618760
Effective search space used: 3806618760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 157 (65.1 bits)